Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015727

Physical Location & Seq

Genomic Coordinates Reverse (-)

26752859 .. 26754986

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCGATGAAGTATCAGCACGCTTGGCGGCTACACTAGCTATCTCGGACGACAGAAGGACTTCTTTCGTCCAAATTTGGGCATTCTCCTGGCCGAAGAATAATCCCAAACCTACAGGCTTGAAGCCTAAGAAACTCAAGCTATCGGCTAAACCAAAATTGAGGAAGAAGTGCGCCTTTAAGCAGGCTGTTGAGGTGCCTCCAGAAGTTATGGAGGGCATATATGGATGTGAGCAAAACGGAAGGGTAGGAGGTCAAGGAGTGGTTTTAGCTATGTTGGCAGCGTCTACCAAAGGAGCTCGATCTTCTGCTCGTTTAATGCGACTACTTGTAATAAACGAAGTGGAAATCCGAAGTGGAACGCTCCCCGGAAGGTTGGCTGAAAGTGGATGTGAATGGAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

9.96

Isoelectric Point (pI)

19.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015727)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g24820
rosa_chinensis	RchiOBHm_Chr1g0378511 RchiOBHm_Chr4g0436471
rosa_multiflora	Rmu_sc0000579.1_g000008 Rmu_sc0007627.1_g000012 Rmu_sc0007627.1_g000013 Rmu_sc0008712.1_g000012
rosa_roxburghii	Rroxscaffold_1G00021740
rosa_samantha	Rh1AG026300 Rh1AG430600 Rh1BG388500 Rh1DG047400 Rh1DG419600 Rh3BG116100 Rh4DG351000 Rh6AG316700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	41, 142, 272, 299
AluI	AGCT	4 cut(s)	41, 142, 272, 299
Alw21I	GWGCWC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	30, 282
BlsI	GCNGC	2 cut(s)	31, 283
Bme1390I	CCNGG	2 cut(s)	91, 369
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	91, 369
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	233, 395
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	22, 186
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	233, 395
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 38, 278
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	89, 367
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	233, 395
Cac8I	GCNNGC	2 cut(s)	22, 186
CfoI	GCGC	1 cut(s)	176
CseI	GACGC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	301
FaiI	YATR	5 cut(s)	212, 221, 223, 225, 275
FalI	AAGNNNNNCTT	4 cut(s)	49, 81, 161, 193
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	30, 282
FokI	GGATG	2 cut(s)	240, 402
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	30, 282
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	30, 282
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	369
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	49, 353
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	51, 237, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 38, 278
HpyF3I	CTNAG	1 cut(s)	129
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	296, 369
LpnPI	CCDG	6 cut(s)	76, 102, 103, 170, 216, 382
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	38
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	3 cut(s)	109, 178, 297
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	2 cut(s)	75, 158
MnlI	CCTC	5 cut(s)	156, 187, 208, 210, 245
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	180, 317
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	91, 369
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	26, 38, 278
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	31, 283
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	180, 317
SatI	GCNGC	2 cut(s)	30, 282
Sau3AI	GATC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	91, 369
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	8 cut(s)	43, 115, 144, 198, 256, 274, 301, 377
SfcI	CTRYAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	75, 158
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	89, 367
TaqI	TCGA	2 cut(s)	6, 301
TasI	AATT	2 cut(s)	75, 158
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	180, 317
Tru9I	TTAA	2 cut(s)	180, 317
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	255
XapI	RAATTY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.