RchiOBHm_Chr1g0378771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019851
Physical Location & Seq
Reverse (-)
65120407 .. 65121134
728 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60217

Sequence Viewer

Length: 363 bp
ATGACTATTTTACCCCTCCCTTCCTTTTTTATTTATTTTTTTAATCTCTCTGTCTCTTTTAATTCTATTTTCTGCTTCTCTCTCTCACTCTCTCACAATGTGAACCAACGCCCTAACTCGACTGGCGCTCCACCGTCAGGCGGCCTCAAGCCGATGCACGGGTTTCATTCTCTTCGTCTCGCCATCGCCGATAGTTCTGTGGCCTTGGATCATCCATGCATCGAACGAGGGAGAAGAATCGACAATCCAAAGCTTGAAATTTTCCGGCGAAGTCTTCTGCAAATTCTGGCGACTCCGGCAGCCGATTTAACTCCATGTAGTATGAATCTTTCTCCCCTTGTCACGCTCTACTTGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

9.06

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378771 RchiOBHm_Chr2g0152721 RchiOBHm_Chr2g0171811 RchiOBHm_Chr4g0432101
rosa_laevigata RLG00000006440
rosa_multiflora Rmu_ssc0000201.1_g000020
rosa_roxburghii Rroxscaffold_3G00258500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 258, 282
AdeI CACNNNGTG 1 cut(s) 100
AfiI CCNNNNNNNGG 3 cut(s) 137, 140, 158
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 58, 182
AlwI GGATC 1 cut(s) 216
AoxI GGCC 2 cut(s) 142, 201
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 258, 282
AspLEI GCGC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 58, 182
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 2 cut(s) 142, 300
BlsI GCNGC 2 cut(s) 143, 301
BmsI GCATC 2 cut(s) 144, 228
BpiI GAAGAC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 140, 158
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 137, 140, 158
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 2 cut(s) 144, 203
BsiSI CCGG 2 cut(s) 265, 296
BslI CCNNNNNNNGG 3 cut(s) 137, 140, 158
BsmAI GTCTC 2 cut(s) 58, 182
BsmBI CGTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 144, 203
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 144, 203
BspPI GGATC 1 cut(s) 216
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 2 cut(s) 58, 182
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 296, 352
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 2 cut(s) 144, 203
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 211
CfoI GCGC 1 cut(s) 128
CviAII CATG 2 cut(s) 216, 315
CviJI RGCY 5 cut(s) 144, 151, 203, 253, 302
CviKI_1 RGCY 5 cut(s) 144, 151, 203, 253, 302
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 2 cut(s) 219, 318
FaiI YATR 4 cut(s) 217, 316, 323, 361
FatI CATG 2 cut(s) 215, 314
Fnu4HI GCNGC 2 cut(s) 142, 300
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 142, 300
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 142, 300
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 144, 203
HapII CCGG 2 cut(s) 265, 296
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 219, 318
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 3 cut(s) 237, 292, 325
HpaII CCGG 2 cut(s) 265, 296
Hpy166II GTNNAC 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 157, 219, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 352
Hsp92II CATG 2 cut(s) 219, 318
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 108, 123, 272, 278, 309
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 144, 228
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 164, 246, 266
MluCI AATT 3 cut(s) 61, 258, 282
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 3 cut(s) 26, 155, 221
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 3 cut(s) 42, 60, 308
MspI CCGG 2 cut(s) 265, 296
MwoI GCNNNNNNNGC 2 cut(s) 296, 352
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 219, 318
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 237, 325
PkrI GCNGC 2 cut(s) 143, 301
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 42, 60, 308
SatI GCNGC 2 cut(s) 142, 300
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 1 cut(s) 286
SetI ASST 1 cut(s) 255
SfaNI GCATC 2 cut(s) 144, 228
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 61, 258, 282
SsiI CCGC 1 cut(s) 141
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 119, 222, 240
TasI AATT 3 cut(s) 61, 258, 282
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 237, 325
Tru1I TTAA 3 cut(s) 42, 60, 308
Tru9I TTAA 3 cut(s) 42, 60, 308
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 155, 338
XapI RAATTY 2 cut(s) 258, 282
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.