RchiOBHm_Chr2g0171811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019851
Physical Location & Seq
Forward (+)
85367387 .. 85368492
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53918

Sequence Viewer

Length: 306 bp
ATGAAGTACACGTCACGACGAGTTCGTGGAAATTTTCGGAGAATTTTTCGAGAGAGAGAGCTGAGCTCTCTGACCCGAAGCTGCAGCGGGACCCGAGGGAGAAATCCGGCCCGAACGCCATCCTCCGGCCACGACGCAGCGCCGGAACACCGGAAGGAGCTTCGTCTCCACGTCGTCTACCTCCCTACACCCTTAGATCATCCATGCAACAACGGTGAGCGGAGCAGCAACAACAGGAAGCCCCGAGCCTTCTCCGGCCATCTCTGCAACTTCCGGCGACCGATTAAGCCGCATTTGCGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.81

Weight (kDa)

11.74

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378771 RchiOBHm_Chr2g0152721 RchiOBHm_Chr2g0171811 RchiOBHm_Chr4g0432101
rosa_laevigata RLG00000006440
rosa_multiflora Rmu_ssc0000201.1_g000020
rosa_roxburghii Rroxscaffold_3G00258500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 177
AciI CCGC 3 cut(s) 87, 220, 290
AcoI YGGCCR 2 cut(s) 127, 256
AcsI RAATTY 2 cut(s) 31, 42
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 9
AjiI CACGTC 2 cut(s) 12, 172
AluBI AGCT 4 cut(s) 61, 66, 81, 160
AluI AGCT 4 cut(s) 61, 66, 81, 160
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 170
Ama87I CYCGRG 2 cut(s) 93, 243
AoxI GGCC 3 cut(s) 108, 127, 256
ApeKI GCWGC 4 cut(s) 81, 84, 137, 225
ApoI RAATTY 2 cut(s) 31, 42
AspLEI GCGC 2 cut(s) 142, 300
AspS9I GGNCC 2 cut(s) 90, 109
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 2 cut(s) 93, 243
AvaII GGWCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 4 cut(s) 68, 96, 149, 237
BccI CCATC 2 cut(s) 127, 267
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 5 cut(s) 82, 85, 138, 226, 290
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 5 cut(s) 83, 86, 139, 227, 291
Bme18I GGWCC 1 cut(s) 90
BmeT110I CYCGRG 2 cut(s) 93, 243
BmgBI CACGTC 2 cut(s) 12, 172
BmgT120I GGNCC 2 cut(s) 90, 109
BmiI GGNNCC 2 cut(s) 91, 92
BplI GAGNNNNNCTC 2 cut(s) 50, 82
Bpu1102I GCTNAGC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 2 cut(s) 119, 199
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 4 cut(s) 68, 96, 149, 237
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 110, 129, 258
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 93, 243
BsiSI CCGG 7 cut(s) 107, 126, 143, 151, 255, 274, 301
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 110, 129, 258
BsoBI CYCGRG 2 cut(s) 93, 243
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 3 cut(s) 87, 220, 290
BspANI GGCC 3 cut(s) 110, 129, 258
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 91, 92
BspMAI CTGCAG 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 62, 193
BstF5I GGATG 2 cut(s) 119, 199
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 142, 300
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 264, 295
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 4 cut(s) 68, 96, 149, 237
BsuRI GGCC 3 cut(s) 110, 129, 258
BtrI CACGTC 2 cut(s) 12, 172
BtsCI GGATG 2 cut(s) 119, 199
CfoI GCGC 2 cut(s) 142, 300
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 90, 109
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 204
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 62, 193
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 127, 256
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 66
Eco88I CYCGRG 2 cut(s) 93, 243
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 1 cut(s) 207
FaiI YATR 1 cut(s) 205
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 203
FauI CCCGC 1 cut(s) 80
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 82, 85, 138, 226, 290
FokI GGATG 2 cut(s) 106, 186
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 5 cut(s) 82, 85, 138, 226, 290
GlaI GCGC 2 cut(s) 141, 299
GluI GCNGC 5 cut(s) 82, 85, 138, 226, 290
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 3 cut(s) 110, 129, 258
HapII CCGG 7 cut(s) 107, 126, 143, 151, 255, 274, 301
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 142, 300
Hin1II CATG 1 cut(s) 207
Hin6I GCGC 2 cut(s) 140, 298
HinP1I GCGC 2 cut(s) 140, 298
HpaII CCGG 7 cut(s) 107, 126, 143, 151, 255, 274, 301
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 9, 178
Hpy188I TCNGA 2 cut(s) 39, 72
Hpy188III TCNNGA 2 cut(s) 15, 50
Hpy8I GTNNAC 2 cut(s) 9, 178
Hpy99I CGWCG 3 cut(s) 21, 137, 176
HpyAV CCTTC 2 cut(s) 148, 259
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 11, 171
HpyCH4V TGCA 3 cut(s) 84, 207, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 295
HpyF3I CTNAG 2 cut(s) 62, 193
HpySE526I ACGT 2 cut(s) 11, 171
Hsp92II CATG 1 cut(s) 207
HspAI GCGC 2 cut(s) 140, 298
KflI GGGWCCC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 2 cut(s) 157, 222
LpnPI CCDG 7 cut(s) 120, 139, 156, 164, 220, 268, 287
Lsp1109I GCAGC 4 cut(s) 68, 96, 149, 237
MaeII ACGT 2 cut(s) 11, 171
MaeIII GTNAC 1 cut(s) 12
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 220
MboI GATC 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 31, 42
MnlI CCTC 3 cut(s) 89, 133, 191
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 7 cut(s) 107, 126, 143, 151, 255, 274, 301
MwoI GCNNNNNNNGC 2 cut(s) 264, 295
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 2 cut(s) 91, 92
NmuCI GTSAC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PkrI GCNGC 5 cut(s) 83, 86, 139, 227, 291
PpuMI RGGWCCY 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 91, 92
PspPI GGNCC 2 cut(s) 90, 109
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 5 cut(s) 82, 85, 138, 226, 290
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 90, 109
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 14, 63, 68, 83, 162, 174, 183
SfcI CTRYAG 1 cut(s) 82
SgrAI CRCCGGYG 1 cut(s) 300
SinI GGWCC 1 cut(s) 90
Sse9I AATT 2 cut(s) 31, 42
SsiI CCGC 3 cut(s) 87, 220, 290
SstI GAGCTC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 14, 174
TaqI TCGA 1 cut(s) 49
TaqII GACCGA 1 cut(s) 295
TasI AATT 2 cut(s) 31, 42
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 4 cut(s) 81, 84, 137, 225
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 2 cut(s) 31, 42
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.