RLG00000006440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019851
Physical Location & Seq
Forward (+)
7224761 .. 7225507
747 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006440

Sequence Viewer

Length: 321 bp
ATGAGCCTTGATCAGTGGGAACACCAGAAGGATCGAGAGAGGGAGAGAACCAGAGTTCTCTGGCCCGAGACGCACCGCGACCCGGCTGGCGCTCCACCGTCAGGTCACCTCCGGCCGGCGCTCATACACCATCGTCTTCGTCTCGCCGTCGCCAGCAGCCCTCTGTCCTTAGATCGTCCATGCATTGAACGGAGACGGAGAATCGACGACGAGAAGCCCCGAACTTTCTCCGGCCACCACTGCAACTTCCAGCGACCGATTAAGCTGAATTTGGTATGGAAACCCACCTCCTCGTCATGCTCAACACCCCAGTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.46

Weight (kDa)

9.9

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378771 RchiOBHm_Chr2g0152721 RchiOBHm_Chr2g0171811 RchiOBHm_Chr4g0432101
rosa_laevigata RLG00000006440
rosa_multiflora Rmu_ssc0000201.1_g000020
rosa_roxburghii Rroxscaffold_3G00258500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 2 cut(s) 113, 232
AcsI RAATTY 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 82, 101, 115
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 3 cut(s) 62, 146, 187
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 3 cut(s) 62, 113, 232
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 2 cut(s) 92, 121
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 131
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 62, 146, 187
BfoI RGCGCY 2 cut(s) 93, 122
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 101, 115
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 82, 101, 115
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 280
BseX3I CGGCCG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 2 cut(s) 116, 257
BshFI GGCC 3 cut(s) 64, 115, 234
BsiEI CGRYCG 2 cut(s) 116, 257
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 4 cut(s) 83, 112, 116, 231
BslI CCNNNNNNNGG 3 cut(s) 82, 101, 115
BsmAI GTCTC 3 cut(s) 62, 146, 187
BsmBI CGTCTC 3 cut(s) 62, 146, 187
BsnI GGCC 3 cut(s) 64, 115, 234
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 3 cut(s) 10, 31, 172
BspACI CCGC 1 cut(s) 76
BspANI GGCC 3 cut(s) 64, 115, 234
BspFNI CGCG 1 cut(s) 78
BspPI GGATC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 3 cut(s) 10, 31, 172
Bst4CI ACNGT 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 88, 117, 154
BstDEI CTNAG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 104
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 2 cut(s) 93, 122
BstHHI GCGC 2 cut(s) 92, 121
BstKTI GATC 3 cut(s) 13, 34, 175
BstMAI GTCTC 3 cut(s) 62, 146, 187
BstMBI GATC 3 cut(s) 10, 31, 172
BstMCI CGRYCG 2 cut(s) 116, 257
BstMWI GCNNNNNNNGC 2 cut(s) 70, 240
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 128
BstZI CGGCCG 1 cut(s) 113
BsuRI GGCC 3 cut(s) 64, 115, 234
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 20, 238
Cac8I GCNNGC 3 cut(s) 88, 117, 154
CfoI GCGC 2 cut(s) 92, 121
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 1 cut(s) 79
CviAII CATG 2 cut(s) 180, 297
CviJI RGCY 8 cut(s) 6, 64, 86, 115, 159, 217, 234, 265
CviKI_1 RGCY 8 cut(s) 6, 64, 86, 115, 159, 217, 234, 265
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 12, 33, 174
DpnII GATC 3 cut(s) 10, 31, 172
EaeI YGGCCR 2 cut(s) 113, 232
EagI CGGCCG 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 185
Esp3I CGTCTC 3 cut(s) 62, 146, 187
FaeI CATG 2 cut(s) 183, 300
FaiI YATR 5 cut(s) 125, 181, 277, 298, 315
FatI CATG 2 cut(s) 179, 296
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
GlaI GCGC 2 cut(s) 91, 120
GluI GCNGC 1 cut(s) 157
HaeII RGCGCY 2 cut(s) 93, 122
HaeIII GGCC 3 cut(s) 64, 115, 234
HapII CCGG 4 cut(s) 83, 112, 116, 231
HgaI GACGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 92, 121
Hin1II CATG 2 cut(s) 183, 300
Hin6I GCGC 2 cut(s) 90, 119
HinP1I GCGC 2 cut(s) 90, 119
HinfI GANTC 1 cut(s) 201
HpaII CCGG 4 cut(s) 83, 112, 116, 231
HphI GGTGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 35
Hpy99I CGWCG 3 cut(s) 152, 209, 212
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 183, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 240
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 2 cut(s) 183, 300
HspAI GCGC 2 cut(s) 90, 119
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 31, 172
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 104
MalI GATC 3 cut(s) 12, 33, 174
MboI GATC 3 cut(s) 10, 31, 172
MboII GAAGA 1 cut(s) 128
MluCI AATT 1 cut(s) 268
MnlI CCTC 5 cut(s) 33, 119, 171, 298, 301
Mph1103I ATGCAT 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 115
MseI TTAA 1 cut(s) 261
MspI CCGG 4 cut(s) 83, 112, 116, 231
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 70, 240
NaeI GCCGGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 83
NdeII GATC 3 cut(s) 10, 31, 172
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 2 cut(s) 183, 300
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 158
PspEI GGTNACC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 10, 31, 172
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 83
SetI ASST 4 cut(s) 106, 111, 267, 290
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 34, 204
TaqII GACCGA 1 cut(s) 271
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 2 cut(s) 20, 245
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 205, 211
TspRI CASTG 2 cut(s) 20, 245
XapI RAATTY 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.