Rmu_ssc0000201.1_g000020

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000201.1
OG0019851
Physical Location & Seq
Forward (+)
56707 .. 58570
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000201.1_g000020.1.cds

Sequence Viewer

Length: 453 bp
atgcacgggtttcattctcttcgtctcgccatcgccgatagttctgtggccttggatcatccatgcatcgaacgagggagaagaatcgacaatccaaagcttgaaattttccggcgaagtcttctgcaaattctggcgactccggcagccgatttaactccatgtactagggatccagtcttagcagcaagcaataatgtgggctctcaagatgtacgagcagccttgcaggcagctcggcttcatggtcttaccaacactgaagttaaaggcgattccaagatcctcattgatattcttaatggtacaaattatgttccatggaaaatcaagcagttggttttggacgtcaaagttcttgacagatttgtcaaagtctctttgtttcaacgtactcatagaaaaaccatcttcttggcagatgatatcgccaacactggtcatggttcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

150

Amino Acids

16.58

Weight (kDa)

9.56

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378771 RchiOBHm_Chr2g0152721 RchiOBHm_Chr2g0171811 RchiOBHm_Chr4g0432101
rosa_laevigata RLG00000006440
rosa_multiflora Rmu_ssc0000201.1_g000020
rosa_roxburghii Rroxscaffold_3G00258500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AatII GACGTC 1 cut(s) 351
AclWI GGATC 4 cut(s) 63, 167, 180, 277
AcsI RAATTY 2 cut(s) 105, 129
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 4 cut(s) 166, 216, 307, 394
AgsI TTSAA 2 cut(s) 104, 389
AluBI AGCT 2 cut(s) 100, 236
AluI AGCT 2 cut(s) 100, 236
Alw26I GTCTC 2 cut(s) 29, 382
AlwI GGATC 4 cut(s) 63, 167, 180, 277
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 4 cut(s) 146, 185, 221, 233
ApoI RAATTY 2 cut(s) 105, 129
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 158, 197, 233, 245
BccI CCATC 2 cut(s) 38, 416
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcoDI GTCTC 2 cut(s) 29, 382
BfaI CTAG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 147, 186, 222, 234
BlsI GCNGC 4 cut(s) 148, 187, 223, 235
BmiI GGNNCC 2 cut(s) 174, 448
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 51, 320
Bse1I ACTGG 2 cut(s) 176, 442
BseDI CCNNGG 2 cut(s) 51, 320
BseGI GGATG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 176, 442
BseXI GCAGC 4 cut(s) 158, 197, 233, 245
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 112, 143
BsmAI GTCTC 2 cut(s) 29, 382
BsmBI CGTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 3 cut(s) 55, 172, 282
Bsp19I CCATGG 1 cut(s) 320
BspANI GGCC 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 174, 448
BspPI GGATC 4 cut(s) 63, 167, 180, 277
BsrI ACTGG 2 cut(s) 176, 442
BssECI CCNNGG 2 cut(s) 51, 320
BssMI GATC 3 cut(s) 55, 172, 282
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 2 cut(s) 51, 320
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 190, 231
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 58, 175, 285
BstMAI GTCTC 2 cut(s) 29, 382
BstMBI GATC 3 cut(s) 55, 172, 282
BstMWI GCNNNNNNNGC 2 cut(s) 143, 230
BstV1I GCAGC 4 cut(s) 158, 197, 233, 245
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 172, 282
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 2 cut(s) 172, 282
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 258, 435
Cac8I GCNNGC 2 cut(s) 190, 231
Csp6I GTAC 4 cut(s) 165, 215, 306, 393
CviAII CATG 5 cut(s) 63, 162, 245, 321, 443
CviJI RGCY 7 cut(s) 50, 100, 149, 204, 224, 236, 241
CviKI_1 RGCY 7 cut(s) 50, 100, 149, 204, 224, 236, 241
CviQI GTAC 4 cut(s) 165, 215, 306, 393
DdeI CTNAG 1 cut(s) 181
DpnI GATC 3 cut(s) 57, 174, 284
DpnII GATC 3 cut(s) 55, 172, 282
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 51, 320
Eco24I GRGCYC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 51, 320
EcoT22I ATGCAT 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 2 cut(s) 51, 320
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 5 cut(s) 66, 165, 248, 324, 446
FaiI YATR 7 cut(s) 64, 163, 246, 315, 322, 399, 444
FatI CATG 5 cut(s) 62, 161, 244, 320, 442
Fnu4HI GCNGC 4 cut(s) 147, 186, 222, 234
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 147, 186, 222, 234
FspBI CTAG 1 cut(s) 168
GluI GCNGC 4 cut(s) 147, 186, 222, 234
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 112, 143
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 5 cut(s) 66, 165, 248, 324, 446
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 84, 139, 275
HpaII CCGG 2 cut(s) 112, 143
Hpy188III TCNNGA 2 cut(s) 209, 359
HpyCH4IV ACGT 2 cut(s) 348, 391
HpyCH4V TGCA 4 cut(s) 4, 66, 127, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 230
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 2 cut(s) 348, 391
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 5 cut(s) 66, 165, 248, 324, 446
Kzo9I GATC 3 cut(s) 55, 172, 282
LpnPI CCDG 6 cut(s) 119, 125, 156, 189, 215, 423
Lsp1109I GCAGC 4 cut(s) 158, 197, 233, 245
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 348, 391
MalI GATC 3 cut(s) 57, 174, 284
MboI GATC 3 cut(s) 55, 172, 282
MboII GAAGA 4 cut(s) 11, 93, 113, 403
MflI RGATCY 2 cut(s) 172, 282
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 3 cut(s) 105, 129, 310
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 68, 296
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 3 cut(s) 155, 267, 300
MspI CCGG 2 cut(s) 112, 143
MwoI GCNNNNNNNGC 2 cut(s) 143, 230
NcoI CCATGG 1 cut(s) 320
NdeII GATC 3 cut(s) 55, 172, 282
NlaIII CATG 5 cut(s) 66, 165, 248, 324, 446
NlaIV GGNNCC 2 cut(s) 174, 448
NmeAIII GCCGAG 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 2 cut(s) 84, 275
PkrI GCNGC 4 cut(s) 148, 187, 223, 235
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 174, 448
PsuI RGATCY 2 cut(s) 172, 282
RsaI GTAC 4 cut(s) 166, 216, 307, 394
RsaNI GTAC 4 cut(s) 165, 215, 306, 393
SaqAI TTAA 3 cut(s) 155, 267, 300
SatI GCNGC 4 cut(s) 147, 186, 222, 234
Sau3AI GATC 3 cut(s) 55, 172, 282
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 102, 238, 351, 394
SfaNI GCATC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 3 cut(s) 105, 129, 310
SspMI CTAG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 51, 320
TaiI ACGT 2 cut(s) 351, 394
TaqI TCGA 2 cut(s) 69, 87
TasI AATT 3 cut(s) 105, 129, 310
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 84, 275
Tru1I TTAA 3 cut(s) 155, 267, 300
Tru9I TTAA 3 cut(s) 155, 267, 300
TscAI CASTG 2 cut(s) 265, 442
TseI GCWGC 4 cut(s) 146, 185, 221, 233
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 265, 442
XapI RAATTY 2 cut(s) 105, 129
XspI CTAG 1 cut(s) 168
ZraI GACGTC 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.