RchiOBHm_Chr2g0152721

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
70135684 .. 70136217
534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52186

Sequence Viewer

Length: 210 bp
ATGCACGGGTTTCATTCTCTTCGTCTCGCCATCGCCGATAGTTCTGTGGCCTTGGATCATCCATGCATCGAACGAGGGAGAAGAATCGACAATCCAAAGCTTGAAATTTTCCGGCGAAGTCTTCTGCAAATTCTAGCGACTCCGGCAGCCGATTTAACTCCATGTAGTATGAATCTTTCTCCCCTTGTCACGCTCTACTTGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.68

Weight (kDa)

7.88

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019851)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 105, 129
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 105, 129
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 134
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 112, 143
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 24
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 143, 199
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 58
CviAII CATG 2 cut(s) 63, 162
CviJI RGCY 3 cut(s) 50, 100, 149
CviKI_1 RGCY 3 cut(s) 50, 100, 149
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 2 cut(s) 66, 165
FaiI YATR 4 cut(s) 64, 163, 170, 208
FatI CATG 2 cut(s) 62, 161
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 134
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 112, 143
Hin1II CATG 2 cut(s) 66, 165
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 84, 139, 172
HpaII CCGG 2 cut(s) 112, 143
HpyCH4V TGCA 3 cut(s) 4, 66, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 199
Hsp92II CATG 2 cut(s) 66, 165
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 125, 156
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 11, 93, 113
MluCI AATT 2 cut(s) 105, 129
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 68
MseI TTAA 1 cut(s) 155
MspI CCGG 2 cut(s) 112, 143
MwoI GCNNNNNNNGC 2 cut(s) 143, 199
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 66, 165
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 2 cut(s) 84, 172
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 133
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 75
Sse9I AATT 2 cut(s) 105, 129
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 2 cut(s) 69, 87
TasI AATT 2 cut(s) 105, 129
TfiI GAWTC 2 cut(s) 84, 172
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 185
XapI RAATTY 2 cut(s) 105, 129
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.