Rroxscaffold_3G00258500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019851
Physical Location & Seq
Reverse (-)
52914644 .. 52915605
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258500.1

Sequence Viewer

Length: 228 bp
ATGCAGGTGACCTCAGATCGTCCATGCACTAGTCGAGGAAGAAGAACCGACGGTGAGAAGCCCCGAGCTTTCTCCGGCCACCTCTGCAACTTCCGGCGACTCCGACAACCAGTTGGGCCTTCTGTGTTTGGGTTCGTCTCGGGTCCTTCACGGTTCCTTGACGTCGGCAGTTTTTCGGGCTCTTCTCGGCTTCGTTCTGGCTTGGTTGTATCTATAAAAGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

11.76

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378771 RchiOBHm_Chr2g0152721 RchiOBHm_Chr2g0171811 RchiOBHm_Chr4g0432101
rosa_laevigata RLG00000006440
rosa_multiflora Rmu_ssc0000201.1_g000020
rosa_roxburghii Rroxscaffold_3G00258500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 162
AhlI ACTAGT 1 cut(s) 29
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 142
Ama87I CYCGRG 2 cut(s) 63, 139
AoxI GGCC 2 cut(s) 76, 116
AspS9I GGNCC 2 cut(s) 116, 143
AsuHPI GGTGA 2 cut(s) 19, 65
AvaI CYCGRG 2 cut(s) 63, 139
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 2 cut(s) 63, 139
BmgT120I GGNCC 2 cut(s) 116, 143
BmiI GGNNCC 2 cut(s) 144, 155
BsaHI GRCGYC 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 110
BshFI GGCC 2 cut(s) 78, 118
BsiHKCI CYCGRG 2 cut(s) 63, 139
BsiSI CCGG 2 cut(s) 75, 94
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 78, 118
BsoBI CYCGRG 2 cut(s) 63, 139
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 2 cut(s) 78, 118
BspCNI CTCAG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 144, 155
BspQI GCTCTTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 110
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 53, 153
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 7
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 78, 118
Cfr13I GGNCC 2 cut(s) 116, 143
CviAII CATG 1 cut(s) 24
CviJI RGCY 7 cut(s) 61, 68, 78, 118, 180, 190, 201
CviKI_1 RGCY 7 cut(s) 61, 68, 78, 118, 180, 190, 201
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 63, 139
Eco91I GGTNACC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 1 cut(s) 27
FaiI YATR 2 cut(s) 25, 215
FatI CATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 182
FspBI CTAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 78, 118
HapII CCGG 2 cut(s) 75, 94
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 27
HinfI GANTC 1 cut(s) 99
HpaII CCGG 2 cut(s) 75, 94
HphI GGTGA 2 cut(s) 19, 65
Hpy188I TCNGA 2 cut(s) 16, 104
Hpy99I CGWCG 2 cut(s) 53, 167
HpyAV CCTTC 2 cut(s) 129, 156
HpyCH4III ACNGT 2 cut(s) 53, 153
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 4, 27, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 88, 107, 123, 183
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 51, 54, 174
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 22, 29, 92
MspI CCGG 2 cut(s) 75, 94
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 27
NlaIV GGNNCC 2 cut(s) 144, 155
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 187
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 144, 155
PspPI GGNCC 2 cut(s) 116, 143
PspPPI RGGWCCY 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 2 cut(s) 116, 143
SchI GAGTC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 182
SetI ASST 5 cut(s) 9, 14, 70, 84, 165
SinI GGWCC 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 29
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 53, 153
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 34
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 143
XspI CTAG 1 cut(s) 30
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.