RchiOBHm_Chr4g0432101

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
56267547 .. 56273085
5539 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40074

Sequence Viewer

Length: 204 bp
ATGAAGTACGATGTTCAGAAAGATCACTTGCGCCCTAACCTGATCGGCGCTCTACCGTCAGGCCGCCTCCGGCTAGCGCATGGGTATCATTCTTTTCGTCTCGTCGTCGCCGACAGCTCTGTGGCCTTGGATCATCCATGCATCGAAAGAGGAATGAGAATCGACAATCCAAAGCTTGAAATTTTCCAGCGAAGTCTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.67

Weight (kDa)

9.51

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019851)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 2 cut(s) 117, 175
AluI AGCT 2 cut(s) 117, 175
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 138
AoxI GGCC 2 cut(s) 61, 123
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 3 cut(s) 33, 50, 79
AsuNHI GCTAGC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmsI GCATC 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 133
BshFI GGCC 2 cut(s) 63, 125
BsiSI CCGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 63, 125
Bsp143I GATC 3 cut(s) 22, 42, 130
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 63, 125
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 22, 42, 130
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 75
BstF5I GGATG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 3 cut(s) 33, 50, 79
BstKTI GATC 3 cut(s) 25, 45, 133
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 22, 42, 130
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 63, 125
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 3 cut(s) 33, 50, 79
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 80, 138
CviJI RGCY 5 cut(s) 63, 73, 117, 125, 175
CviKI_1 RGCY 5 cut(s) 63, 73, 117, 125, 175
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 24, 44, 132
DpnII GATC 3 cut(s) 22, 42, 130
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 2 cut(s) 83, 141
FaiI YATR 3 cut(s) 81, 139, 202
FatI CATG 2 cut(s) 79, 137
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 74
GlaI GCGC 3 cut(s) 32, 49, 78
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 63, 125
HapII CCGG 1 cut(s) 70
HhaI GCGC 3 cut(s) 33, 50, 79
Hin1II CATG 2 cut(s) 83, 141
Hin6I GCGC 3 cut(s) 31, 48, 77
HinP1I GCGC 3 cut(s) 31, 48, 77
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 107, 110
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 141
Hsp92II CATG 2 cut(s) 83, 141
HspAI GCGC 3 cut(s) 31, 48, 77
Kzo9I GATC 3 cut(s) 22, 42, 130
LpnPI CCDG 4 cut(s) 45, 53, 83, 200
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 74
MalI GATC 3 cut(s) 24, 44, 132
MboI GATC 3 cut(s) 22, 42, 130
MboII GAAGA 1 cut(s) 188
MluCI AATT 1 cut(s) 180
MnlI CCTC 2 cut(s) 77, 143
Mph1103I ATGCAT 1 cut(s) 143
MspI CCGG 1 cut(s) 70
NdeII GATC 3 cut(s) 22, 42, 130
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 83, 141
NsiI ATGCAT 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 65
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 3 cut(s) 22, 42, 130
SetI ASST 3 cut(s) 42, 119, 177
SfaNI GCATC 1 cut(s) 150
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 144, 162
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 180
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.