RchiOBHm_Chr1g0383251

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015276
Physical Location & Seq
Forward (+)
67666320 .. 67672922
6603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60619

Sequence Viewer

Length: 2394 bp
ATGCTCTCCTCCGCCGCCGCCCTATTCGGCAACCCCATCTCCCTCACTCTCACTCCTCCTCCTCCTCCTCCTCTCACTCTCTCTCTTCACTTCAAGAACCGCGCTTTCCTCACTCGCTTCTCAATCTCAGCCAACCATGACTCTATCAAGTCACAGGTCCATCTCGACAGTCTTCGGGTTTTGGAATGGGATAAGCTCTGCGATTCCGTCGCCGGCTTCGCTCGTACTCCGTTAGGCCGCGAAGCCACCAAGGCAAAGCTATGGTGTTTGAGCCAGACCTACGAAGAAAGCTTGAGGCTTCTGGACGAAACCAATGCCGCGGTTGAGATGCTCAAGCACGGCGCTTGCAGTTTGGATTTTGGCGGTGTTAAAGTCGTTTTGGTGGAATCTGCTATACAACGTGCTCGGAGGAGCTCAGCGGTGGAAGGAATCGAAGCGGTAGCTGTGATGGAGCTGCTGCAGTACGCAGAGCATTTGCAGAGTAATCTGAAAGGTGCAATCAAGGAAGATGCGGAGTGGTACAGGCGATTTATGCCTCTTTCGGAAGTGATAATGGGATTTGTGGTAAACCGATCACTAGCTAAGCTGATACAGCAAGTTATAGATGAAGACGGCCGTGTTAAAGACTCTGCGAGTCCAAACCTGAAACGTTTACGCAATCAAGTTCGGACGCTTGAGAAAAAGATATATCAGTTAATGAACAGCCTAGTCCGGAATGACAAGAGTGTAACACCACTTCTGGAAGTGAGTACCGTTGATGGAAGGTGGTGCATAAAATCCAGTGCTAATGAAATGACAAGTTTCAAGGGTCTACTGTTGCCCAGTGGTTCAGGCAAAGGAAGCATTGTTGAGCCATTATCTGCTGTCCCTCTGAACGATGAATTACAACAAACAAGGGCACTAGTATCAGAGGCTGAGGCGGAGGTTCTCTCTATGTTAACAGAAAAGATGCAAATGGATCTTGAGAATATTGAACAGCTATTAAACAGTATTATTGAACTGGATGTGGTGAATGCCCGAGCAACTTATGGCCTAGCATATGGAGGAACATGTCCCAATATATATCTCCCAGGAGGTCATAGTTCTTCTGCGAGTGATGCCTACATTTCTGGGAACAAACATCCACAGGCATCCTATTCCAAAAAAAGTGGATGGGTGTTGTATCTGCCGAAAGCTCATCATCCTTTATTACTGCAACAGCATAGACAAAATTTAAAGAAGGCCAGGAAGGATTCCAAGAATGTGACTCTGGTTCACCCAGTTCCAGTTGATTTTTTTATCACACAGAAAATTCGAGTTTTGGTTATCACTGGCCCTAATACAGGGGGAAAAACCATTGGCCTGAAGACTGTAGGATTAGCAGCTATGATGGCAAAATCAGGTCTTCATGTTTTATGTTCTGAGTCGGTACACATCCCTTGGTTTGATTCAGTGTTTGCTGACATTGGTGATGAACAATCCCTGTCTCAATCTCTGTCCACATTCTCGGGCCACCTAAAACATATAAGCGACATACAATTGCAGTCAACAAGTTGCTCACTCGTGCTACTAGATGAGGTCGGTGCGGGAACAAACCCCCTTGAAGGAGCAGCGCTGGGGATGTCACTATTGGAATCTTTTGCTGAAACTGGTGCTTTGTTGACAATTGCCACAACACATCATGGTGAACTCAAAACCCTGAAATACAGCAATGACGCCTTTGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAGCCCACTTACAGAATTCTCTGGGGAGTACCAGGGCGTTCAAATGCAATCAATATAGCTGAAAGGTTGGGACTACCTGGTAGAGTAGTTGATAATGCCCGAGAACTGTATGGTGCAGCTAGTGCAGGGATAGATGAGGTTATAGTTGATATGGAACGGTTAAAGCAGGAGTATCAAGAGCTTTTATATGAAGCACAGAATCATCTGACGATCTCAAGAGAGTTGCATGAGAAACTGTTGGTTGCCAAAAGGAAGATTATGGAACATGGTAATGATCAAAGATTTAGGCAAATGCGAGAAATATCTGAGGCTGCTGCAATGGCACGATCTATTCTTCACAAAAAAGCTCGAAAGCAACGCGAATCTGCAATTCAATCTCTGCAGCCTACTTTGGAGCGAAAAAGACAGCTTGCATTGGCAACAAATGCAACTGATAATGGTGAGAATTCAACCACAAAAAGAAGGGTATCCTCTTCTGAAGATGTTAAAAAATCGCCATCAGATAAGTTTGAGCTTCCCAAGGTTGGCAATATGGTGTTTGTTTCTTCGCTTGGAAAGAAGGCGACAGTTTTGAGAGTGGAGCCATCTAAGGAGGAAATTTTGGTTCAAGCTGGTAACATAAAGATGAAACTGAAACTAGGTGACATCAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

797

Amino Acids

87.88

Weight (kDa)

8.7

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_V PF00488 434 - 615 8.5e-32 MutS domain V
MSSS PF20297 754 - 795 1.9e-10 MutS2 and Smr-associated SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54090
fragaria_vesca FvH4_7g33260 FvH4_7g33260
malus_domestica MD07G1302400.v1.1
prunus_persica Prupe.2G321600_v2.0.a1
pyrus_communis pycom07g27570
rosa_chinensis RchiOBHm_Chr1g0383251
rosa_laevigata RLG00000026119
rosa_multiflora Rmu_sc0007173.1_g000024
rosa_roxburghii Rroxscaffold_4G00277470
rosa_rugosa Rorug01G0439800
rosa_samantha Rh1AG465500 Rh1BG422900 Rh1CG436100 Rh1DG455600
rosa_wichuraiana Rw1G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 811
AccII CGCG 4 cut(s) 102, 240, 320, 2097
AccIII TCCGGA 1 cut(s) 711
AclI AACGTT 1 cut(s) 649
AclWI GGATC 1 cut(s) 966
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 5 cut(s) 1210, 1290, 1752, 2182, 2334
AcuI CTGAAG 2 cut(s) 1364, 2235
AcyI GRCGYC 1 cut(s) 1695
AfaI GTAC 6 cut(s) 226, 464, 521, 751, 1410, 1767
AfeI AGCGCT 1 cut(s) 1593
AfiI CCNNNNNNNGG 3 cut(s) 1322, 1583, 2261
AflIII ACRYGT 1 cut(s) 1049
AhlI ACTAGT 1 cut(s) 901
AjiI CACGTC 1 cut(s) 2391
AjnI CCWGG 4 cut(s) 1069, 1223, 1768, 1813
Alw21I GWGCWC 2 cut(s) 406, 416
Alw26I GTCTC 1 cut(s) 1470
AlwI GGATC 1 cut(s) 966
AlwNI CAGNNNCTG 1 cut(s) 914
Ama87I CYCGRG 3 cut(s) 1017, 1486, 1836
Aor13HI TCCGGA 1 cut(s) 711
Aor51HI AGCGCT 1 cut(s) 1593
AoxI GGCC 7 cut(s) 235, 613, 1030, 1221, 1312, 1339, 1489
ApeKI GCWGC 8 cut(s) 454, 457, 1361, 1589, 1853, 2048, 2051, 2119
ApoI RAATTY 5 cut(s) 1210, 1290, 1752, 2182, 2334
AspLEI GCGC 3 cut(s) 104, 344, 1594
AspS9I GGNCC 3 cut(s) 157, 1313, 1489
AsuHPI GGTGA 6 cut(s) 1021, 1247, 1460, 1676, 2189, 2390
AvaI CYCGRG 3 cut(s) 1017, 1486, 1836
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 416
BarI GAAGNNNNNNTAC 2 cut(s) 720, 752
BauI CACGAG 1 cut(s) 1541
BbsI GAAGAC 4 cut(s) 164, 615, 1352, 1376
Bbv12I GWGCWC 2 cut(s) 406, 416
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 8 cut(s) 441, 444, 1373, 1601, 1865, 2035, 2038, 2131
BccI CCATC 8 cut(s) 44, 168, 442, 752, 1146, 1363, 2242, 2329
BceAI ACGGC 3 cut(s) 355, 600, 628
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 4 cut(s) 1071, 1225, 1770, 1815
BciVI GTATCC 1 cut(s) 2215
BclI TGATCA 1 cut(s) 2011
BcoDI GTCTC 1 cut(s) 1470
BcuI ACTAGT 1 cut(s) 901
BfaI CTAG 7 cut(s) 578, 707, 902, 1034, 1550, 1857, 2375
BfmI CTRYAG 3 cut(s) 458, 1350, 2117
BfoI RGCGCY 2 cut(s) 345, 1595
BfuI GTATCC 1 cut(s) 2215
BglI GCCNNNNNGGC 1 cut(s) 251
BlpI GCTNAGC 2 cut(s) 415, 582
Bme1390I CCNGG 4 cut(s) 1071, 1225, 1770, 1815
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 3 cut(s) 1017, 1486, 1836
BmgBI CACGTC 1 cut(s) 2391
BmgT120I GGNCC 3 cut(s) 157, 1313, 1489
BmiI GGNNCC 1 cut(s) 2319
BmrFI CCNGG 4 cut(s) 1071, 1225, 1770, 1815
BmrI ACTGGG 2 cut(s) 816, 1253
BmsI GCATC 5 cut(s) 318, 499, 939, 1087, 1139
BmuI ACTGGG 2 cut(s) 816, 1253
BpiI GAAGAC 4 cut(s) 164, 615, 1352, 1376
BplI GAGNNNNNCTC 2 cut(s) 914, 946
Bpu10I CCTNAGC 1 cut(s) 915
Bpu1102I GCTNAGC 2 cut(s) 415, 582
BpuEI CTTGAG 5 cut(s) 313, 317, 695, 983, 1936
BsaHI GRCGYC 1 cut(s) 1695
BsaJI CCNNGG 6 cut(s) 249, 318, 1069, 1418, 1769, 2256
BsaWI WCCGGW 1 cut(s) 711
BsaXI ACNNNNNCTCC 6 cut(s) 23, 37, 43, 53, 67, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 1322, 1583, 2261
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 7 cut(s) 780, 822, 1005, 1259, 1265, 1315, 1633
Bse3DI GCAATG 2 cut(s) 1696, 2061
BseAI TCCGGA 1 cut(s) 711
BseBI CCWGG 4 cut(s) 1071, 1225, 1770, 1815
BseDI CCNNGG 6 cut(s) 249, 318, 1069, 1418, 1769, 2256
BseGI GGATG 7 cut(s) 1009, 1120, 1130, 1157, 1180, 1413, 1605
BseLI CCNNNNNNNGG 3 cut(s) 1322, 1583, 2261
BseMI GCAATG 2 cut(s) 1696, 2061
BseMII CTCAG 5 cut(s) 141, 429, 906, 1392, 2034
BseNI ACTGG 7 cut(s) 780, 822, 1005, 1259, 1265, 1315, 1633
BseRI GAGGAG 7 cut(s) 45, 48, 51, 54, 57, 60, 424
BseSI GKGCMC 1 cut(s) 901
BseX3I CGGCCG 1 cut(s) 613
BseXI GCAGC 8 cut(s) 441, 444, 1373, 1601, 1865, 2035, 2038, 2131
BseYI CCCAGC 1 cut(s) 1594
BsgI GTGCAG 2 cut(s) 1872, 1881
Bsh1236I CGCG 4 cut(s) 102, 240, 320, 2097
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 7 cut(s) 237, 615, 1032, 1223, 1314, 1341, 1491
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 2 cut(s) 406, 416
BsiHKCI CYCGRG 3 cut(s) 1017, 1486, 1836
BsiSI CCGG 2 cut(s) 213, 712
BslFI GGGAC 3 cut(s) 851, 1038, 1821
BslI CCNNNNNNNGG 3 cut(s) 1322, 1583, 2261
BsmAI GTCTC 1 cut(s) 1470
BsmFI GGGAC 3 cut(s) 851, 1038, 1821
BsmI GAATGC 1 cut(s) 1018
BsnI GGCC 7 cut(s) 237, 615, 1032, 1223, 1314, 1341, 1491
BsoBI CYCGRG 3 cut(s) 1017, 1486, 1836
Bsp1286I GDGCHC 3 cut(s) 406, 416, 901
Bsp13I TCCGGA 1 cut(s) 711
Bsp143I GATC 5 cut(s) 572, 958, 1947, 2011, 2063
Bsp1720I GCTNAGC 2 cut(s) 415, 582
BspANI GGCC 7 cut(s) 237, 615, 1032, 1223, 1314, 1341, 1491
BspCNI CTCAG 5 cut(s) 140, 428, 907, 1393, 2035
BspEI TCCGGA 1 cut(s) 711
BspFNI CGCG 4 cut(s) 102, 240, 320, 2097
BspLI GGNNCC 1 cut(s) 2319
BspMAI CTGCAG 2 cut(s) 462, 2121
BspPI GGATC 1 cut(s) 966
BsrDI GCAATG 2 cut(s) 1696, 2061
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 7 cut(s) 780, 822, 1005, 1259, 1265, 1315, 1633
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 6 cut(s) 249, 318, 1069, 1418, 1769, 2256
BssMI GATC 5 cut(s) 572, 958, 1947, 2011, 2063
BssNI GRCGYC 1 cut(s) 1695
BssSI CACGAG 1 cut(s) 1541
BssT1I CCWWGG 3 cut(s) 249, 1418, 2256
Bst2BI CACGAG 1 cut(s) 1541
Bst2UI CCWGG 4 cut(s) 1071, 1225, 1770, 1815
Bst4CI ACNGT 9 cut(s) 170, 754, 816, 989, 1351, 1845, 1896, 1974, 2305
Bst6I CTCTTC 2 cut(s) 90, 2215
BstACI GRCGYC 1 cut(s) 1695
BstAPI GCANNNNNTGC 2 cut(s) 1859, 2162
BstC8I GCNNGC 3 cut(s) 214, 346, 2148
BstDEI CTNAG 7 cut(s) 127, 415, 582, 915, 1401, 2043, 2325
BstDSI CCRYGG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 1320
BstF5I GGATG 7 cut(s) 1009, 1120, 1130, 1157, 1180, 1413, 1605
BstFNI CGCG 4 cut(s) 102, 240, 320, 2097
BstH2I RGCGCY 2 cut(s) 345, 1595
BstHHI GCGC 3 cut(s) 104, 344, 1594
BstKTI GATC 5 cut(s) 575, 961, 1950, 2014, 2066
BstMAI GTCTC 1 cut(s) 1470
BstMBI GATC 5 cut(s) 572, 958, 1947, 2011, 2063
BstMCI CGRYCG 1 cut(s) 616
BstNI CCWGG 4 cut(s) 1071, 1225, 1770, 1815
BstNSI RCATGY 2 cut(s) 1053, 1713
BstSCI CCNGG 4 cut(s) 1069, 1223, 1768, 1813
BstSFI CTRYAG 3 cut(s) 458, 1350, 2117
BstSLI GKGCMC 1 cut(s) 901
BstUI CGCG 4 cut(s) 102, 240, 320, 2097
BstV1I GCAGC 8 cut(s) 441, 444, 1373, 1601, 1865, 2035, 2038, 2131
BstV2I GAAGAC 4 cut(s) 164, 615, 1352, 1376
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
BstZI CGGCCG 1 cut(s) 613
BsuI GTATCC 1 cut(s) 2215
BsuRI GGCC 7 cut(s) 237, 615, 1032, 1223, 1314, 1341, 1491
BtgI CCRYGG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 2391
BtsCI GGATG 7 cut(s) 1009, 1120, 1130, 1157, 1180, 1413, 1605
BtsIMutI CAGTG 4 cut(s) 787, 829, 1308, 1437
Cac8I GCNNGC 3 cut(s) 214, 346, 2148
CaiI CAGNNNCTG 1 cut(s) 914
CfoI GCGC 3 cut(s) 104, 344, 1594
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 157, 1313, 1489
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 2 cut(s) 679, 1703
CsiI ACCWGGT 1 cut(s) 1813
Csp6I GTAC 6 cut(s) 225, 463, 520, 750, 1409, 1766
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 7 cut(s) 137, 1050, 1388, 1661, 1710, 1964, 2003
CviQI GTAC 6 cut(s) 225, 463, 520, 750, 1409, 1766
DdeI CTNAG 7 cut(s) 127, 415, 582, 915, 1401, 2043, 2325
DpnI GATC 5 cut(s) 574, 960, 1949, 2013, 2065
DpnII GATC 5 cut(s) 572, 958, 1947, 2011, 2063
DraI TTTAAA 1 cut(s) 1215
EaeI YGGCCR 1 cut(s) 613
EagI CGGCCG 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 90, 2215
EarI CTCTTC 2 cut(s) 90, 2215
EciI GGCGGA 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 414
EclXI CGGCCG 1 cut(s) 613
Eco130I CCWWGG 3 cut(s) 249, 1418, 2256
Eco24I GRGCYC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 157
Eco47III AGCGCT 1 cut(s) 1593
Eco52I CGGCCG 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 414
Eco57I CTGAAG 2 cut(s) 1364, 2235
Eco88I CYCGRG 3 cut(s) 1017, 1486, 1836
EcoICRI GAGCTC 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 1320
EcoRI GAATTC 2 cut(s) 1752, 2182
EcoRII CCWGG 4 cut(s) 1069, 1223, 1768, 1813
EcoT14I CCWWGG 3 cut(s) 249, 1418, 2256
EcoT22I ATGCAT 1 cut(s) 1711
EcoT38I GRGCYC 1 cut(s) 416
ErhI CCWWGG 3 cut(s) 249, 1418, 2256
FaeI CATG 7 cut(s) 140, 1053, 1391, 1664, 1713, 1967, 2006
FaqI GGGAC 3 cut(s) 851, 1038, 1821
FatI CATG 7 cut(s) 136, 1049, 1387, 1660, 1709, 1963, 2002
FauI CCCGC 1 cut(s) 1558
FauNDI CATATG 1 cut(s) 1039
FbaI TGATCA 1 cut(s) 2011
FblI GTMKAC 1 cut(s) 811
FokI GGATG 7 cut(s) 1016, 1107, 1117, 1164, 1167, 1400, 1612
FriOI GRGCYC 1 cut(s) 416
FspBI CTAG 7 cut(s) 578, 707, 902, 1034, 1550, 1857, 2375
GlaI GCGC 3 cut(s) 103, 343, 1593
GsaI CCCAGC 1 cut(s) 1598
HaeII RGCGCY 2 cut(s) 345, 1595
HaeIII GGCC 7 cut(s) 237, 615, 1032, 1223, 1314, 1341, 1491
HapII CCGG 2 cut(s) 213, 712
HgaI GACGC 2 cut(s) 679, 1703
HhaI GCGC 3 cut(s) 104, 344, 1594
Hin1I GRCGYC 1 cut(s) 1695
Hin1II CATG 7 cut(s) 140, 1053, 1391, 1664, 1713, 1967, 2006
Hin6I GCGC 3 cut(s) 102, 342, 1592
HinP1I GCGC 3 cut(s) 102, 342, 1592
HincII GTYRAC 3 cut(s) 939, 1527, 1641
HindII GTYRAC 3 cut(s) 939, 1527, 1641
HindIII AAGCTT 1 cut(s) 289
HpaI GTTAAC 1 cut(s) 939
HpaII CCGG 2 cut(s) 213, 712
HphI GGTGA 6 cut(s) 1021, 1247, 1460, 1676, 2189, 2390
Hpy188III TCNNGA 9 cut(s) 94, 164, 302, 712, 740, 962, 1913, 1953, 2386
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 7 cut(s) 419, 756, 1213, 1222, 1577, 2193, 2290
HpyCH4III ACNGT 9 cut(s) 170, 754, 816, 989, 1351, 1845, 1896, 1974, 2305
HpyCH4IV ACGT 3 cut(s) 400, 649, 2390
HpyF3I CTNAG 7 cut(s) 127, 415, 582, 915, 1401, 2043, 2325
HpySE526I ACGT 3 cut(s) 400, 649, 2390
Hsp92I GRCGYC 1 cut(s) 1695
Hsp92II CATG 7 cut(s) 140, 1053, 1391, 1664, 1713, 1967, 2006
HspAI GCGC 3 cut(s) 102, 342, 1592
Kpn2I TCCGGA 1 cut(s) 711
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 2011
KspAI GTTAAC 1 cut(s) 939
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 5 cut(s) 572, 958, 1947, 2011, 2063
LmnI GCTCC 5 cut(s) 411, 451, 1586, 2131, 2317
Lsp1109I GCAGC 8 cut(s) 441, 444, 1373, 1601, 1865, 2035, 2038, 2131
LweI GCATC 5 cut(s) 318, 499, 939, 1087, 1139
MabI ACCWGGT 1 cut(s) 1813
MaeI CTAG 7 cut(s) 578, 707, 902, 1034, 1550, 1857, 2375
MaeII ACGT 3 cut(s) 400, 649, 2390
MaeIII GTNAC 6 cut(s) 150, 727, 1243, 1602, 2351, 2378
MalI GATC 5 cut(s) 574, 960, 1949, 2013, 2065
MboI GATC 5 cut(s) 572, 958, 1947, 2011, 2063
MfeI CAATTG 2 cut(s) 1517, 1644
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 3 cut(s) 406, 416, 901
MluCI AATT 9 cut(s) 881, 1210, 1290, 1517, 1644, 1752, 2106, 2182, 2334
MlyI GAGTC 5 cut(s) 134, 620, 643, 1240, 1412
Mph1103I ATGCAT 1 cut(s) 1711
MroI TCCGGA 1 cut(s) 711
MroNI GCCGGC 1 cut(s) 212
MseI TTAA 9 cut(s) 369, 621, 695, 938, 983, 1214, 1736, 1898, 2223
MslI CAYNNNNRTG 3 cut(s) 1662, 2007, 2360
MspA1I CMGCKG 2 cut(s) 320, 419
MspI CCGG 2 cut(s) 213, 712
MspR9I CCNGG 4 cut(s) 1071, 1225, 1770, 1815
MunI CAATTG 2 cut(s) 1517, 1644
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 4 cut(s) 1071, 1225, 1770, 1815
MvnI CGCG 4 cut(s) 102, 240, 320, 2097
NaeI GCCGGC 1 cut(s) 214
NdeI CATATG 1 cut(s) 1039
NdeII GATC 5 cut(s) 572, 958, 1947, 2011, 2063
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 7 cut(s) 140, 1053, 1391, 1664, 1713, 1967, 2006
NlaIV GGNNCC 1 cut(s) 2319
NmuCI GTSAC 4 cut(s) 150, 1243, 1602, 2378
NsiI ATGCAT 1 cut(s) 1711
NspI RCATGY 2 cut(s) 1053, 1713
PciI ACATGT 1 cut(s) 1049
PctI GAATGC 1 cut(s) 1018
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 8 cut(s) 203, 386, 429, 1232, 1427, 1613, 1936, 2099
PleI GAGTC 5 cut(s) 134, 620, 642, 1240, 1411
PpsI GAGTC 5 cut(s) 134, 620, 642, 1240, 1411
PscI ACATGT 1 cut(s) 1049
Psp124BI GAGCTC 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 649
Psp6I CCWGG 4 cut(s) 1069, 1223, 1768, 1813
PspFI CCCAGC 1 cut(s) 1594
PspGI CCWGG 4 cut(s) 1069, 1223, 1768, 1813
PspN4I GGNNCC 1 cut(s) 2319
PspPI GGNCC 3 cut(s) 157, 1313, 1489
PstI CTGCAG 2 cut(s) 462, 2121
PstNI CAGNNNCTG 1 cut(s) 914
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 6 cut(s) 226, 464, 521, 751, 1410, 1767
RsaNI GTAC 6 cut(s) 225, 463, 520, 750, 1409, 1766
RseI CAYNNNNRTG 3 cut(s) 1662, 2007, 2360
SacI GAGCTC 1 cut(s) 416
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 9 cut(s) 369, 621, 695, 938, 983, 1214, 1736, 1898, 2223
Sau3AI GATC 5 cut(s) 572, 958, 1947, 2011, 2063
Sau96I GGNCC 3 cut(s) 157, 1313, 1489
SchI GAGTC 5 cut(s) 134, 620, 643, 1240, 1412
ScrFI CCNGG 4 cut(s) 1071, 1225, 1770, 1815
SduI GDGCHC 3 cut(s) 406, 416, 901
SexAI ACCWGGT 1 cut(s) 1813
SfaNI GCATC 5 cut(s) 318, 499, 939, 1087, 1139
SfcI CTRYAG 3 cut(s) 458, 1350, 2117
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 3 cut(s) 1662, 2007, 2360
SmlI CTYRAG 5 cut(s) 292, 332, 674, 962, 1951
SmoI CTYRAG 5 cut(s) 292, 332, 674, 962, 1951
SpeI ACTAGT 1 cut(s) 901
Sse9I AATT 9 cut(s) 881, 1210, 1290, 1517, 1644, 1752, 2106, 2182, 2334
SspI AATATT 1 cut(s) 970
SspMI CTAG 7 cut(s) 578, 707, 902, 1034, 1550, 1857, 2375
SstI GAGCTC 1 cut(s) 416
StyD4I CCNGG 4 cut(s) 1069, 1223, 1768, 1813
StyI CCWWGG 3 cut(s) 249, 1418, 2256
TaaI ACNGT 9 cut(s) 170, 754, 816, 989, 1351, 1845, 1896, 1974, 2305
TaiI ACGT 3 cut(s) 403, 652, 2393
TaqI TCGA 4 cut(s) 165, 432, 1294, 2086
TasI AATT 9 cut(s) 881, 1210, 1290, 1517, 1644, 1752, 2106, 2182, 2334
TauI GCSGC 4 cut(s) 17, 20, 240, 320
TfiI GAWTC 8 cut(s) 203, 386, 429, 1232, 1427, 1613, 1936, 2099
Tru1I TTAA 9 cut(s) 369, 621, 695, 938, 983, 1214, 1736, 1898, 2223
Tru9I TTAA 9 cut(s) 369, 621, 695, 938, 983, 1214, 1736, 1898, 2223
TscAI CASTG 4 cut(s) 787, 829, 1315, 1437
TseFI GTSAC 4 cut(s) 150, 1243, 1602, 2378
TseI GCWGC 8 cut(s) 454, 457, 1361, 1589, 1853, 2048, 2051, 2119
Tsp45I GTSAC 4 cut(s) 150, 1243, 1602, 2378
TspDTI ATGAA 9 cut(s) 621, 713, 804, 894, 1376, 1467, 1740, 1941, 2378
TspGWI ACGGA 2 cut(s) 196, 219
TspRI CASTG 4 cut(s) 787, 829, 1315, 1437
VpaK11BI GGWCC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 1320
XapI RAATTY 5 cut(s) 1210, 1290, 1752, 2182, 2334
XceI RCATGY 2 cut(s) 1053, 1713
XmiI GTMKAC 1 cut(s) 811
XspI CTAG 7 cut(s) 578, 707, 902, 1034, 1550, 1857, 2375
Zsp2I ATGCAT 1 cut(s) 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.