Rh1DG455600

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015276
Physical Location & Seq
Forward (+)
66149150 .. 66154813
5664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG455600.1

Sequence Viewer

Length: 2391 bp
ATGCTCTCCTCCTCCGCCGCCCTATTCGGCAACCCCATCTCCCTCACTCTCACTCCTCCTCCTCCTCCTCTCACTCTCTCTCTTCACTTCAAGAACCGCGCTTTCCTCACTCGCTTCTCAATCTCAGCCAACCATGACTCTATCAAGTCACAGGTCCATCTCGACAGTCTTAGGGTTTTGGAATGGGATAAGCTCTGCGATTCCGTCGCCGCCTTCGCTCGTACTCCGTTAGGCCGCGAAGCCACCAAGGCAAAGCTATGGTGTTTGAGCCAGACCTACGAAGAAAGCTTGAGGCTTCTGGACGAAACCAATGCCGCGGTTGAGATGCTCAAGCACGGCGCTTGCAGTTTGGATTTTGGCGGTGTTAAAGTCGTTTTGGTGGAATCTGCTATACAACGTGCTCGGAGGAGCTCGGCGGTGGAAGGAATCGAAGCGGTAGCTGTGATGGAGTTGCTGCAGTACGCAGAGCATTTGCAGAGTAATCTGAAAGGTGCAATCAAGGAAGATGCGGAGTGGTACAGGCGATTTATACCTCTTTCGGAAGTGATAATGGGATTTGTGGTAAACCGATCACTAGCTAAGCTGATACAGCAAGTTATAGATGAAGACGGCCGTGTTAAAGACTCTGCGAGTCCAAACCTGAAACGTTTACGCAATCAAGTTCGGACGCTTGAGAAAAAGATATATCAGTTAATGGACAGCCTAGTCCGGAATGACAAGAGTGAAACACCACTTCTGGAAGTGAGTACTGTTGATGGAAGGTGGTGCATAAAATCCAGTGCTAATGAAATGACAAGTTTCAAGGGTCTACTGTTGCCCAGTGGTTCAGGCAAAGGAAGCATTGTTGAGCCATTATCTGCTGTCCCTCTGAACGATGAGTTACAACAAACAAGGGCACTAGTATCAGAGGCTGAGGCAGAGGTTCTCTCTATGTTAACAGAAAAGATGCAAATGGATCTTGAGAATATTGAACAGCTATTAAACAGTATTATTGAACTGGATGTGGTGAATGCCCGAGCAACTTATGGCCTAGCATATGGAGGAACATGTCCCAATATATATCTCCCAGGAGGTCATAGTTCTTCTGCTAGTGATGCCTACATTTCTGGGAACAAACATCCACAGGCATCCTATTCCAAAAAAAGTGGATGGGTGTTGTATCTGCCAAAAGCTCATCATCCTTTATTACTGCAACAGCATAGACAAAATTTAAAGAAGGCCAGGAAGGATTCCAAGAATGTTTCTCTGGTTCACCCAGTTCCAGTTGATTTTTTTATCTCACAGAAAACTCGAGTTTTGGTTATCACTGGCCCTAATACAGGGGGGAAAACCATTGGCCTGAAGACTGTAGGATTAGCAGCTATGATGGCAAAATCAGGTCTTCATGTTTTATGTTCTGAGTCGGTACAAATCCCTTGGTTTGATTCAGTGTTTGCTGACATTGGTGATGAACAATCCCTGTCTCAATCTCTGTCCACCTTCTCGGGACACCTAAAACATATAAGCGACATACAATCGCAGTCAACAAGTTGTTCACTCGTGCTACTAGATGAGGTCGGTGCGGGAACAAATCCTCTTGAAGGAGCAGCGCTGGGGATGTCACTATTGGAATCTTTTGCTGAAACTGGTGCTTTGTTGACAATTGCCACAACACATCATGGTGAACTCAAAACCCTGAAATACAGCAATGACGCCTTTGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAGCCAACTTACAGAATTCTGTGGGGAGTACCAGGGCGTTCAAATGCGATCAATATAGCTGAAAGGTTAGGACTACCTGGTAAAGTAGTTGATAATGCCCAAGAACTATATGGTGCAGCTAGTGCAGGGATAGATGAGGTTATAGTTGATATGGAACGGTTAAAGCAGGAGTATCAAGAGCTTTTATATGAAGCACAGAATCATCTGATGATCTCAAGAGAGTTGCATGAGAAACTGTTGGTTGCCAAAAGGAAGATTATGGAACATGGTAATGATCAAAGATTTAGGCAAATGCGAGAAATATCTGAGGCTGCTGCAATGGCACGATCTATTCTTCACAAAAAAGCTCGGAAGCAACGCGAATCTGCAATTCAATCTCTGCAGCCTACTTTGGAGCGAAAAAGACAGCTTGCATTGGCAACAAAAACAACTGATAATGGTGAGAATTCAACCACAAAAAGAAGGGTATCCTCTTCTGAAGATGTTAAAAAATCGCCATCAGATAAGTTTGAGCTTCCCAAGGTTGGCAATATGGTGTTTGTTTCTTCGCTTGGAAAGAAGGCCACAGTTTTGAGAGTGGAGCCATCTAAGGAAGAAATTTTGGTTCAAGCTGGTAACATAAAGATGAAACTGAAACTAGGTGACATCAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

796

Amino Acids

87.83

Weight (kDa)

8.6

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_V PF00488 433 - 614 1.9e-32 MutS domain V
MSSS PF20297 753 - 794 1.9e-10 MutS2 and Smr-associated SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54090
fragaria_vesca FvH4_7g33260 FvH4_7g33260
malus_domestica MD07G1302400.v1.1
prunus_persica Prupe.2G321600_v2.0.a1
pyrus_communis pycom07g27570
rosa_chinensis RchiOBHm_Chr1g0383251
rosa_laevigata RLG00000026119
rosa_multiflora Rmu_sc0007173.1_g000024
rosa_roxburghii Rroxscaffold_4G00277470
rosa_rugosa Rorug01G0439800
rosa_samantha Rh1AG465500 Rh1BG422900 Rh1CG436100 Rh1DG455600
rosa_wichuraiana Rw1G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 704
AccI GTMKAC 1 cut(s) 808
AccII CGCG 4 cut(s) 99, 237, 317, 2094
AccIII TCCGGA 1 cut(s) 708
AclI AACGTT 1 cut(s) 646
AclWI GGATC 1 cut(s) 963
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 4 cut(s) 1207, 1749, 2179, 2331
AcuI CTGAAG 2 cut(s) 1361, 2232
AcyI GRCGYC 1 cut(s) 1692
AfaI GTAC 6 cut(s) 223, 461, 518, 748, 1407, 1764
AfeI AGCGCT 1 cut(s) 1590
AfiI CCNNNNNNNGG 3 cut(s) 1319, 1580, 2258
AflIII ACRYGT 1 cut(s) 1046
AhlI ACTAGT 1 cut(s) 898
AjnI CCWGG 4 cut(s) 1066, 1220, 1765, 1810
Alw21I GWGCWC 2 cut(s) 403, 413
Alw26I GTCTC 1 cut(s) 1467
AlwI GGATC 1 cut(s) 963
AlwNI CAGNNNCTG 1 cut(s) 911
Ama87I CYCGRG 3 cut(s) 1014, 1290, 1483
Aor13HI TCCGGA 1 cut(s) 708
Aor51HI AGCGCT 1 cut(s) 1590
AoxI GGCC 7 cut(s) 232, 610, 1027, 1218, 1309, 1336, 2295
ApeKI GCWGC 7 cut(s) 454, 1358, 1586, 1850, 2045, 2048, 2116
ApoI RAATTY 4 cut(s) 1207, 1749, 2179, 2331
AspLEI GCGC 3 cut(s) 101, 341, 1591
AspS9I GGNCC 2 cut(s) 154, 1310
AsuHPI GGTGA 6 cut(s) 1018, 1244, 1457, 1673, 2186, 2387
AvaI CYCGRG 3 cut(s) 1014, 1290, 1483
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 413
BauI CACGAG 1 cut(s) 1538
BbsI GAAGAC 3 cut(s) 612, 1349, 1373
Bbv12I GWGCWC 2 cut(s) 403, 413
BbvCI CCTCAGC 1 cut(s) 912
BbvI GCAGC 7 cut(s) 441, 1370, 1598, 1862, 2032, 2035, 2128
BccI CCATC 8 cut(s) 44, 165, 439, 749, 1143, 1360, 2239, 2326
BceAI ACGGC 3 cut(s) 352, 597, 625
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 4 cut(s) 1068, 1222, 1767, 1812
BciVI GTATCC 1 cut(s) 2212
BclI TGATCA 1 cut(s) 2008
BcoDI GTCTC 1 cut(s) 1467
BcuI ACTAGT 1 cut(s) 898
BfaI CTAG 8 cut(s) 575, 704, 899, 1031, 1089, 1547, 1854, 2372
BfmI CTRYAG 3 cut(s) 455, 1347, 2114
BfoI RGCGCY 2 cut(s) 342, 1592
BfuI GTATCC 1 cut(s) 2212
BglI GCCNNNNNGGC 1 cut(s) 248
BlpI GCTNAGC 1 cut(s) 579
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 4 cut(s) 1068, 1222, 1767, 1812
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 3 cut(s) 1014, 1290, 1483
BmgT120I GGNCC 2 cut(s) 154, 1310
BmiI GGNNCC 1 cut(s) 2316
BmrFI CCNGG 4 cut(s) 1068, 1222, 1767, 1812
BmrI ACTGGG 2 cut(s) 813, 1250
BmsI GCATC 5 cut(s) 315, 496, 936, 1084, 1136
BmuI ACTGGG 2 cut(s) 813, 1250
BpiI GAAGAC 3 cut(s) 612, 1349, 1373
BplI GAGNNNNNCTC 2 cut(s) 911, 943
Bpu10I CCTNAGC 1 cut(s) 912
Bpu1102I GCTNAGC 1 cut(s) 579
BpuEI CTTGAG 5 cut(s) 310, 314, 692, 980, 1933
BsaHI GRCGYC 1 cut(s) 1692
BsaJI CCNNGG 6 cut(s) 246, 315, 1066, 1415, 1766, 2253
BsaWI WCCGGW 1 cut(s) 708
BsaXI ACNNNNNCTCC 6 cut(s) 23, 37, 43, 53, 67, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 1319, 1580, 2258
Bse1I ACTGG 7 cut(s) 777, 819, 1002, 1256, 1262, 1312, 1630
Bse3DI GCAATG 2 cut(s) 1693, 2058
BseAI TCCGGA 1 cut(s) 708
BseBI CCWGG 4 cut(s) 1068, 1222, 1767, 1812
BseDI CCNNGG 6 cut(s) 246, 315, 1066, 1415, 1766, 2253
BseGI GGATG 6 cut(s) 1006, 1117, 1127, 1154, 1177, 1602
BseLI CCNNNNNNNGG 3 cut(s) 1319, 1580, 2258
BseMI GCAATG 2 cut(s) 1693, 2058
BseMII CTCAG 4 cut(s) 138, 903, 1389, 2031
BseNI ACTGG 7 cut(s) 777, 819, 1002, 1256, 1262, 1312, 1630
BseRI GAGGAG 6 cut(s) 45, 48, 51, 54, 57, 421
BseSI GKGCMC 1 cut(s) 898
BseX3I CGGCCG 1 cut(s) 610
BseXI GCAGC 7 cut(s) 441, 1370, 1598, 1862, 2032, 2035, 2128
BseYI CCCAGC 1 cut(s) 1591
BsgI GTGCAG 2 cut(s) 1869, 1878
Bsh1236I CGCG 4 cut(s) 99, 237, 317, 2094
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 7 cut(s) 234, 612, 1029, 1220, 1311, 1338, 2297
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 2 cut(s) 403, 413
BsiHKCI CYCGRG 3 cut(s) 1014, 1290, 1483
BsiSI CCGG 1 cut(s) 709
BslFI GGGAC 3 cut(s) 848, 1035, 1500
BslI CCNNNNNNNGG 3 cut(s) 1319, 1580, 2258
BsmAI GTCTC 1 cut(s) 1467
BsmFI GGGAC 3 cut(s) 848, 1035, 1500
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 7 cut(s) 234, 612, 1029, 1220, 1311, 1338, 2297
BsoBI CYCGRG 3 cut(s) 1014, 1290, 1483
Bsp1286I GDGCHC 3 cut(s) 403, 413, 898
Bsp13I TCCGGA 1 cut(s) 708
Bsp143I GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
Bsp1720I GCTNAGC 1 cut(s) 579
BspANI GGCC 7 cut(s) 234, 612, 1029, 1220, 1311, 1338, 2297
BspCNI CTCAG 4 cut(s) 137, 904, 1390, 2032
BspEI TCCGGA 1 cut(s) 708
BspFNI CGCG 4 cut(s) 99, 237, 317, 2094
BspLI GGNNCC 1 cut(s) 2316
BspMAI CTGCAG 2 cut(s) 459, 2118
BspPI GGATC 1 cut(s) 963
BsrDI GCAATG 2 cut(s) 1693, 2058
BsrI ACTGG 7 cut(s) 777, 819, 1002, 1256, 1262, 1312, 1630
BssECI CCNNGG 6 cut(s) 246, 315, 1066, 1415, 1766, 2253
BssMI GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
BssNI GRCGYC 1 cut(s) 1692
BssSI CACGAG 1 cut(s) 1538
BssT1I CCWWGG 3 cut(s) 246, 1415, 2253
Bst2BI CACGAG 1 cut(s) 1538
Bst2UI CCWGG 4 cut(s) 1068, 1222, 1767, 1812
Bst4CI ACNGT 8 cut(s) 167, 751, 813, 986, 1348, 1893, 1971, 2302
Bst6I CTCTTC 2 cut(s) 87, 2212
BstACI GRCGYC 1 cut(s) 1692
BstAPI GCANNNNNTGC 1 cut(s) 1856
BstC8I GCNNGC 2 cut(s) 343, 2145
BstDEI CTNAG 7 cut(s) 124, 170, 579, 912, 1398, 2040, 2322
BstDSI CCRYGG 1 cut(s) 315
BstENI CCTNNNNNAGG 2 cut(s) 1317, 1578
BstF5I GGATG 6 cut(s) 1006, 1117, 1127, 1154, 1177, 1602
BstFNI CGCG 4 cut(s) 99, 237, 317, 2094
BstH2I RGCGCY 2 cut(s) 342, 1592
BstHHI GCGC 3 cut(s) 101, 341, 1591
BstKTI GATC 6 cut(s) 572, 958, 1785, 1947, 2011, 2063
BstMAI GTCTC 1 cut(s) 1467
BstMBI GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 8 cut(s) 215, 248, 589, 837, 1094, 1367, 1856, 2054
BstNI CCWGG 4 cut(s) 1068, 1222, 1767, 1812
BstNSI RCATGY 2 cut(s) 1050, 1710
BstSCI CCNGG 4 cut(s) 1066, 1220, 1765, 1810
BstSFI CTRYAG 3 cut(s) 455, 1347, 2114
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 4 cut(s) 99, 237, 317, 2094
BstV1I GCAGC 7 cut(s) 441, 1370, 1598, 1862, 2032, 2035, 2128
BstV2I GAAGAC 3 cut(s) 612, 1349, 1373
BstX2I RGATCY 1 cut(s) 955
BstYI RGATCY 1 cut(s) 955
BstZI CGGCCG 1 cut(s) 610
BsuI GTATCC 1 cut(s) 2212
BsuRI GGCC 7 cut(s) 234, 612, 1029, 1220, 1311, 1338, 2297
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 6 cut(s) 1006, 1117, 1127, 1154, 1177, 1602
BtsIMutI CAGTG 4 cut(s) 784, 826, 1305, 1434
Cac8I GCNNGC 2 cut(s) 343, 2145
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 3 cut(s) 101, 341, 1591
Cfr13I GGNCC 2 cut(s) 154, 1310
Cfr42I CCGCGG 1 cut(s) 318
CseI GACGC 2 cut(s) 676, 1700
CsiI ACCWGGT 1 cut(s) 1810
Csp6I GTAC 6 cut(s) 222, 460, 517, 747, 1406, 1763
CspCI CAANNNNNGTGG 2 cut(s) 1126, 1161
CviAII CATG 7 cut(s) 134, 1047, 1385, 1658, 1707, 1961, 2000
CviQI GTAC 6 cut(s) 222, 460, 517, 747, 1406, 1763
DdeI CTNAG 7 cut(s) 124, 170, 579, 912, 1398, 2040, 2322
DpnI GATC 6 cut(s) 571, 957, 1784, 1946, 2010, 2062
DpnII GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
DraI TTTAAA 1 cut(s) 1212
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 610
EagI CGGCCG 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 87, 2212
EarI CTCTTC 2 cut(s) 87, 2212
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 411
EclXI CGGCCG 1 cut(s) 610
Eco130I CCWWGG 3 cut(s) 246, 1415, 2253
Eco24I GRGCYC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 154
Eco47III AGCGCT 1 cut(s) 1590
Eco52I CGGCCG 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 1361, 2232
Eco88I CYCGRG 3 cut(s) 1014, 1290, 1483
EcoICRI GAGCTC 1 cut(s) 411
EcoNI CCTNNNNNAGG 2 cut(s) 1317, 1578
EcoRI GAATTC 2 cut(s) 1749, 2179
EcoRII CCWGG 4 cut(s) 1066, 1220, 1765, 1810
EcoT14I CCWWGG 3 cut(s) 246, 1415, 2253
EcoT22I ATGCAT 1 cut(s) 1708
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 3 cut(s) 246, 1415, 2253
FaeI CATG 7 cut(s) 137, 1050, 1388, 1661, 1710, 1964, 2003
FaqI GGGAC 3 cut(s) 848, 1035, 1500
FatI CATG 7 cut(s) 133, 1046, 1384, 1657, 1706, 1960, 1999
FauI CCCGC 1 cut(s) 1555
FauNDI CATATG 1 cut(s) 1036
FbaI TGATCA 1 cut(s) 2008
FblI GTMKAC 1 cut(s) 808
FokI GGATG 6 cut(s) 1013, 1104, 1114, 1161, 1164, 1609
FriOI GRGCYC 1 cut(s) 413
FspBI CTAG 8 cut(s) 575, 704, 899, 1031, 1089, 1547, 1854, 2372
GlaI GCGC 3 cut(s) 100, 340, 1590
GsaI CCCAGC 1 cut(s) 1595
HaeII RGCGCY 2 cut(s) 342, 1592
HaeIII GGCC 7 cut(s) 234, 612, 1029, 1220, 1311, 1338, 2297
HapII CCGG 1 cut(s) 709
HgaI GACGC 2 cut(s) 676, 1700
HhaI GCGC 3 cut(s) 101, 341, 1591
Hin1I GRCGYC 1 cut(s) 1692
Hin1II CATG 7 cut(s) 137, 1050, 1388, 1661, 1710, 1964, 2003
Hin6I GCGC 3 cut(s) 99, 339, 1589
HinP1I GCGC 3 cut(s) 99, 339, 1589
HincII GTYRAC 3 cut(s) 936, 1524, 1638
HindII GTYRAC 3 cut(s) 936, 1524, 1638
HindIII AAGCTT 1 cut(s) 286
HpaI GTTAAC 1 cut(s) 936
HpaII CCGG 1 cut(s) 709
HphI GGTGA 6 cut(s) 1018, 1244, 1457, 1673, 2186, 2387
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 9 cut(s) 223, 416, 753, 1210, 1219, 1489, 1574, 2190, 2287
HpyCH4III ACNGT 8 cut(s) 167, 751, 813, 986, 1348, 1893, 1971, 2302
HpyCH4IV ACGT 2 cut(s) 397, 646
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 248, 589, 837, 1094, 1367, 1856, 2054
HpyF3I CTNAG 7 cut(s) 124, 170, 579, 912, 1398, 2040, 2322
HpySE526I ACGT 2 cut(s) 397, 646
Hsp92I GRCGYC 1 cut(s) 1692
Hsp92II CATG 7 cut(s) 137, 1050, 1388, 1661, 1710, 1964, 2003
HspAI GCGC 3 cut(s) 99, 339, 1589
Kpn2I TCCGGA 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 2008
KspAI GTTAAC 1 cut(s) 936
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
LmnI GCTCC 4 cut(s) 408, 1583, 2128, 2314
Lsp1109I GCAGC 7 cut(s) 441, 1370, 1598, 1862, 2032, 2035, 2128
LweI GCATC 5 cut(s) 315, 496, 936, 1084, 1136
MabI ACCWGGT 1 cut(s) 1810
MaeI CTAG 8 cut(s) 575, 704, 899, 1031, 1089, 1547, 1854, 2372
MaeII ACGT 2 cut(s) 397, 646
MaeIII GTNAC 5 cut(s) 147, 879, 1599, 2348, 2375
MalI GATC 6 cut(s) 571, 957, 1784, 1946, 2010, 2062
MboI GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
MfeI CAATTG 1 cut(s) 1641
MflI RGATCY 1 cut(s) 955
MhlI GDGCHC 3 cut(s) 403, 413, 898
MluCI AATT 6 cut(s) 1207, 1641, 1749, 2103, 2179, 2331
MlyI GAGTC 4 cut(s) 131, 617, 640, 1409
Mph1103I ATGCAT 1 cut(s) 1708
MroI TCCGGA 1 cut(s) 708
MseI TTAA 9 cut(s) 366, 618, 692, 935, 980, 1211, 1733, 1895, 2220
MslI CAYNNNNRTG 3 cut(s) 1659, 2004, 2357
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 709
MspR9I CCNGG 4 cut(s) 1068, 1222, 1767, 1812
MunI CAATTG 1 cut(s) 1641
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 4 cut(s) 1068, 1222, 1767, 1812
MvnI CGCG 4 cut(s) 99, 237, 317, 2094
MwoI GCNNNNNNNGC 8 cut(s) 215, 248, 589, 837, 1094, 1367, 1856, 2054
NdeI CATATG 1 cut(s) 1036
NdeII GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
NlaIII CATG 7 cut(s) 137, 1050, 1388, 1661, 1710, 1964, 2003
NlaIV GGNNCC 1 cut(s) 2316
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 3 cut(s) 147, 1599, 2375
NsiI ATGCAT 1 cut(s) 1708
NspI RCATGY 2 cut(s) 1050, 1710
PaeR7I CTCGAG 1 cut(s) 1290
PciI ACATGT 1 cut(s) 1046
PctI GAATGC 1 cut(s) 1015
PfeI GAWTC 8 cut(s) 200, 383, 426, 1229, 1424, 1610, 1933, 2096
PleI GAGTC 4 cut(s) 131, 617, 639, 1408
PpsI GAGTC 4 cut(s) 131, 617, 639, 1408
PscI ACATGT 1 cut(s) 1046
Psp124BI GAGCTC 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 646
Psp6I CCWGG 4 cut(s) 1066, 1220, 1765, 1810
PspFI CCCAGC 1 cut(s) 1591
PspGI CCWGG 4 cut(s) 1066, 1220, 1765, 1810
PspN4I GGNNCC 1 cut(s) 2316
PspPI GGNCC 2 cut(s) 154, 1310
PspXI VCTCGAGB 1 cut(s) 1290
PstI CTGCAG 2 cut(s) 459, 2118
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 955
RsaI GTAC 6 cut(s) 223, 461, 518, 748, 1407, 1764
RsaNI GTAC 6 cut(s) 222, 460, 517, 747, 1406, 1763
RseI CAYNNNNRTG 3 cut(s) 1659, 2004, 2357
SacI GAGCTC 1 cut(s) 413
SacII CCGCGG 1 cut(s) 318
SaqAI TTAA 9 cut(s) 366, 618, 692, 935, 980, 1211, 1733, 1895, 2220
Sau3AI GATC 6 cut(s) 569, 955, 1782, 1944, 2008, 2060
Sau96I GGNCC 2 cut(s) 154, 1310
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 4 cut(s) 131, 617, 640, 1409
ScrFI CCNGG 4 cut(s) 1068, 1222, 1767, 1812
SduI GDGCHC 3 cut(s) 403, 413, 898
SexAI ACCWGGT 1 cut(s) 1810
SfaNI GCATC 5 cut(s) 315, 496, 936, 1084, 1136
SfcI CTRYAG 3 cut(s) 455, 1347, 2114
Sfr274I CTCGAG 1 cut(s) 1290
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 1290
SmiMI CAYNNNNRTG 3 cut(s) 1659, 2004, 2357
SmlI CTYRAG 6 cut(s) 289, 329, 671, 959, 1290, 1948
SmoI CTYRAG 6 cut(s) 289, 329, 671, 959, 1290, 1948
SpeI ACTAGT 1 cut(s) 898
Sse9I AATT 6 cut(s) 1207, 1641, 1749, 2103, 2179, 2331
SspI AATATT 1 cut(s) 967
SspMI CTAG 8 cut(s) 575, 704, 899, 1031, 1089, 1547, 1854, 2372
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 4 cut(s) 1066, 1220, 1765, 1810
StyI CCWWGG 3 cut(s) 246, 1415, 2253
TaaI ACNGT 8 cut(s) 167, 751, 813, 986, 1348, 1893, 1971, 2302
TaiI ACGT 2 cut(s) 400, 649
TaqI TCGA 3 cut(s) 162, 429, 1291
TasI AATT 6 cut(s) 1207, 1641, 1749, 2103, 2179, 2331
TatI WGTACW 1 cut(s) 746
TauI GCSGC 4 cut(s) 20, 212, 237, 317
TfiI GAWTC 8 cut(s) 200, 383, 426, 1229, 1424, 1610, 1933, 2096
Tru1I TTAA 9 cut(s) 366, 618, 692, 935, 980, 1211, 1733, 1895, 2220
Tru9I TTAA 9 cut(s) 366, 618, 692, 935, 980, 1211, 1733, 1895, 2220
TscAI CASTG 4 cut(s) 784, 826, 1312, 1434
TseFI GTSAC 3 cut(s) 147, 1599, 2375
TseI GCWGC 7 cut(s) 454, 1358, 1586, 1850, 2045, 2048, 2116
Tsp45I GTSAC 3 cut(s) 147, 1599, 2375
TspDTI ATGAA 7 cut(s) 618, 801, 1373, 1464, 1737, 1938, 2375
TspGWI ACGGA 2 cut(s) 193, 216
TspRI CASTG 4 cut(s) 784, 826, 1312, 1434
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 2 cut(s) 1317, 1578
XapI RAATTY 4 cut(s) 1207, 1749, 2179, 2331
XceI RCATGY 2 cut(s) 1050, 1710
XcmI CCANNNNNNNNNTGG 1 cut(s) 1841
XhoI CTCGAG 1 cut(s) 1290
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 8 cut(s) 575, 704, 899, 1031, 1089, 1547, 1854, 2372
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 1708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.