Rorug01G0439800

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015276
Physical Location & Seq
Reverse (-)
53842781 .. 53844623
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0439800.1

Sequence Viewer

Length: 1362 bp
ATGCTGGACCAATTCTTGACCTACAAGAATCTCATACTCCAGCTCTCACTCTCTCTCACCCTCACTCTCCTCCTCACCTTCCTCAAAATCCCCATCTTCTTCCTCCACAGCCTCCACACCTACATCCACCCCGATAACATCCAGCCCGGCGGTACCCGGGCCGCCATCCGCCGACCCGACTCGTCCGATTCCGGACCCGGGTCCAAACCCAACCCGGAGCTCCGAAAGAGAACCAAGTCCAAGTCCAAGAACACCCCGGCCTTCGATGAAAACAACGCCCAGATCTTCCGGCTCAAGCTCGACGAGGCCCACCTCCAGACCCGCCTCTATTTCCCGGACTACTCCAACGCCTTCACCTTCTCTTTCGTCGCCGTCTCTGCTCTTGCGCTCCAAATATATTTAGGTGATTCGCAATCGGCGGATTCTGGAGTTCTGGTCAATGGGGTTTTCGTTCCTGTTCTGTTAGGGTTTGCGGGGGTTTCGAAGCTGCTGGTGGTTCTTGCGAAGGTTTCGGCGGAGAAATCGGCGTCGAGGAGGTCGGAGAAGCAGCTGAGTGTGGCGCTGGGGGTTGTGGGGCTGGTGGTGGGGAGTGTAGTGTGCTTTAGATTTAGTCCATCGGTTTTGGATTTTGATTTCGGGTCGGTTGATGGGAATGGAAGGCTGTTTATTGCAATTTTGATGGGGTGCTTTTCGGGTTTCTTGTTCATGCCTGCGGCGAAGAGTGCGAGGGCGTTTTGGCTCGGGACTGATCAGATTAGGTCCGATTTGTCGATGCTTTCGTGTGAATGGTTTGGGAGAATGGTGCTTTATGTGAATTATACAATGATTCTGTTTACGGTTTTGTTGTGGATCAATCCGTTAGGTGGAATGCTCGTGAACAAGAATGGGAAAGTTCGAAATGCAGAGGGTTTGATTGGGAATCTCGGGTTTTCTACTTCGGATTTTGCTAAGTTTAGGCTTTGCTGCTTGCTGATTTCGAGTTTTCTGCAGCTGGTTGCGTTGCGGCCGAATTTACAAATGTATTTGAATGAGGCATTGTTGTCTTGGTATCAGAGATTGCATGCTGGGAAGGTTCCTGACTTGGAGTTCAGTAGGGCTAAGGTGTTTTTGCACAATCATTACTTGTGTCTCGTGGTTCTGCAGTTTCTCGCACCGCCAGTATTGTTGCTTCTGTTTCTGGGGATGTCTCGGGTTGATGGCATCTCTCCAGAAGATTACCAATATGTTTGTAGTGTGCTACCCTGTTCTGCCTTTGTGAAAGAAGTGGCGGTCTTTATGGCTTGGTGGATTCTCTTTCTTTGGGCCGTGTATAGTTCAGCTACCATTTTTCTGTATCGTCGCTGCATTTTGTACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

453

Amino Acids

50.62

Weight (kDa)

9.26

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_161AB PF10268 220 - 393 1.7e-16 Predicted transmembrane protein 161AB
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54090
fragaria_vesca FvH4_7g33260 FvH4_7g33260
malus_domestica MD07G1302400.v1.1
prunus_persica Prupe.2G321600_v2.0.a1
pyrus_communis pycom07g27570
rosa_chinensis RchiOBHm_Chr1g0383251
rosa_laevigata RLG00000026119
rosa_multiflora Rmu_sc0007173.1_g000024
rosa_roxburghii Rroxscaffold_4G00277470
rosa_rugosa Rorug01G0439800
rosa_samantha Rh1AG465500 Rh1BG422900 Rh1CG436100 Rh1DG455600
rosa_wichuraiana Rw1G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 191
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 1004
AcsI RAATTY 1 cut(s) 1009
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 2 cut(s) 154, 1352
AfiI CCNNNNNNNGG 2 cut(s) 198, 863
AflIII ACRYGT 1 cut(s) 1353
AgsI TTSAA 1 cut(s) 1027
AluBI AGCT 7 cut(s) 43, 220, 298, 487, 550, 991, 1319
AluI AGCT 7 cut(s) 43, 220, 298, 487, 550, 991, 1319
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 379, 1133, 1191
AlwI GGATC 1 cut(s) 857
Ama87I CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 5 cut(s) 159, 258, 306, 1004, 1302
ApeKI GCWGC 5 cut(s) 487, 547, 963, 988, 1341
ApoI RAATTY 1 cut(s) 1009
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 2 cut(s) 388, 562
AspS9I GGNCC 7 cut(s) 7, 159, 194, 201, 307, 759, 1302
AsuC2I CCSGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
AsuHPI GGTGA 4 cut(s) 49, 67, 346, 416
AsuII TTCGAA 2 cut(s) 482, 895
AvaI CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
AvaII GGWCC 4 cut(s) 7, 194, 201, 759
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 222
BarI GAAGNNNNNNTAC 2 cut(s) 1152, 1184
BauI CACGAG 2 cut(s) 872, 1130
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 474, 559, 950, 1000, 1328
BccI CCATC 6 cut(s) 101, 173, 622, 641, 673, 1190
BceAI ACGGC 2 cut(s) 356, 1289
BcgI CGANNNNNNTGC 2 cut(s) 967, 1001
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
BcoDI GTCTC 3 cut(s) 379, 1133, 1191
BfmI CTRYAG 2 cut(s) 986, 1139
BfoI RGCGCY 1 cut(s) 563
BglII AGATCT 1 cut(s) 282
BisI GCNGC 8 cut(s) 162, 488, 548, 714, 964, 989, 1004, 1342
BlsI GCNGC 8 cut(s) 163, 489, 549, 715, 965, 990, 1005, 1343
Bme1390I CCNGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
Bme18I GGWCC 4 cut(s) 7, 194, 201, 759
BmeT110I CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
BmgT120I GGNCC 7 cut(s) 7, 159, 194, 201, 307, 759, 1302
BmiI GGNNCC 4 cut(s) 154, 196, 202, 1074
BmrFI CCNGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
BmsI GCATC 2 cut(s) 762, 1209
BoxI GACNNNNGTC 1 cut(s) 199
BpmI CTGGAG 4 cut(s) 23, 299, 447, 1191
Bpu10I CCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 2 cut(s) 482, 895
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
BsaHI GRCGYC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 156, 197, 255
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 863
Bse1I ACTGG 1 cut(s) 1157
BseAI TCCGGA 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 156, 197, 255
BseGI GGATG 4 cut(s) 123, 138, 165, 1188
BseLI CCNNNNNNNGG 2 cut(s) 198, 863
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 1157
BseRI GAGGAG 3 cut(s) 59, 62, 547
BseX3I CGGCCG 1 cut(s) 1004
BseXI GCAGC 5 cut(s) 474, 559, 950, 1000, 1328
BseYI CCCAGC 2 cut(s) 562, 1064
Bsh1285I CGRYCG 1 cut(s) 1007
BshFI GGCC 5 cut(s) 161, 260, 308, 1006, 1304
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 1007
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
BsiSI CCGG 8 cut(s) 147, 157, 192, 198, 215, 257, 289, 335
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 2 cut(s) 198, 863
BsmAI GTCTC 3 cut(s) 379, 1133, 1191
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 873
BsnI GGCC 5 cut(s) 161, 260, 308, 1006, 1304
BsoBI CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
Bsp119I TTCGAA 2 cut(s) 482, 895
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 1350
Bsp143I GATC 3 cut(s) 282, 748, 849
BspANI GGCC 5 cut(s) 161, 260, 308, 1006, 1304
BspCNI CTCAG 1 cut(s) 543
BspEI TCCGGA 1 cut(s) 191
BspLI GGNNCC 4 cut(s) 154, 196, 202, 1074
BspMAI CTGCAG 2 cut(s) 990, 1143
BspPI GGATC 1 cut(s) 857
BspT104I TTCGAA 2 cut(s) 482, 895
BspT107I GGYRCC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 1350
BsrI ACTGG 1 cut(s) 1157
BssECI CCNNGG 3 cut(s) 156, 197, 255
BssMI GATC 3 cut(s) 282, 748, 849
BssNI GRCGYC 1 cut(s) 527
BssSI CACGAG 2 cut(s) 872, 1130
Bst2BI CACGAG 2 cut(s) 872, 1130
Bst4CI ACNGT 1 cut(s) 838
Bst6I CTCTTC 1 cut(s) 713
BstACI GRCGYC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 1350
BstBI TTCGAA 2 cut(s) 482, 895
BstC8I GCNNGC 3 cut(s) 711, 968, 1062
BstDEI CTNAG 3 cut(s) 551, 948, 1098
BstF5I GGATG 4 cut(s) 123, 138, 165, 1188
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 2 cut(s) 388, 562
BstKTI GATC 3 cut(s) 285, 751, 852
BstMAI GTCTC 3 cut(s) 379, 1133, 1191
BstMBI GATC 3 cut(s) 282, 748, 849
BstMCI CGRYCG 1 cut(s) 1007
BstMWI GCNNNNNNNGC 2 cut(s) 377, 722
BstNSI RCATGY 2 cut(s) 1064, 1357
BstPAI GACNNNNGTC 1 cut(s) 199
BstSCI CCNGG 8 cut(s) 145, 155, 156, 196, 197, 213, 255, 333
BstSFI CTRYAG 2 cut(s) 986, 1139
BstV1I GCAGC 5 cut(s) 474, 559, 950, 1000, 1328
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZI CGGCCG 1 cut(s) 1004
BsuRI GGCC 5 cut(s) 161, 260, 308, 1006, 1304
BtsCI GGATG 4 cut(s) 123, 138, 165, 1188
Cac8I GCNNGC 3 cut(s) 711, 968, 1062
CfoI GCGC 2 cut(s) 388, 562
Cfr13I GGNCC 7 cut(s) 7, 159, 194, 201, 307, 759, 1302
Cfr9I CCCGGG 2 cut(s) 156, 197
CseI GACGC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 153, 1351
CviAII CATG 3 cut(s) 706, 1061, 1354
CviQI GTAC 2 cut(s) 153, 1351
DdeI CTNAG 3 cut(s) 551, 948, 1098
DpnI GATC 3 cut(s) 284, 750, 851
DpnII GATC 3 cut(s) 282, 748, 849
EaeI YGGCCR 1 cut(s) 1004
EagI CGGCCG 1 cut(s) 1004
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
EciI GGCGGA 3 cut(s) 158, 434, 530
Ecl136II GAGCTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 1004
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 4 cut(s) 7, 194, 201, 759
Eco52I CGGCCG 1 cut(s) 1004
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 5 cut(s) 156, 197, 740, 923, 1188
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 3 cut(s) 709, 1064, 1357
FaqI GGGAC 1 cut(s) 757
FatI CATG 3 cut(s) 705, 1060, 1353
FauI CCCGC 2 cut(s) 329, 466
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 8 cut(s) 162, 488, 548, 714, 964, 989, 1004, 1342
FokI GGATG 4 cut(s) 110, 125, 152, 1195
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 8 cut(s) 162, 488, 548, 714, 964, 989, 1004, 1342
GlaI GCGC 2 cut(s) 387, 561
GluI GCNGC 8 cut(s) 162, 488, 548, 714, 964, 989, 1004, 1342
GsaI CCCAGC 2 cut(s) 566, 1068
GsuI CTGGAG 4 cut(s) 23, 299, 447, 1191
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 5 cut(s) 161, 260, 308, 1006, 1304
HapII CCGG 8 cut(s) 147, 157, 192, 198, 215, 257, 289, 335
HgaI GACGC 1 cut(s) 516
HhaI GCGC 2 cut(s) 388, 562
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 3 cut(s) 709, 1064, 1357
Hin6I GCGC 2 cut(s) 386, 560
HinP1I GCGC 2 cut(s) 386, 560
HinfI GANTC 8 cut(s) 28, 179, 188, 407, 422, 826, 919, 1288
HpaII CCGG 8 cut(s) 147, 157, 192, 198, 215, 257, 289, 335
HphI GGTGA 4 cut(s) 49, 67, 346, 416
Hpy166II GTNNAC 2 cut(s) 834, 877
Hpy188I TCNGA 7 cut(s) 187, 224, 541, 753, 763, 940, 1053
Hpy188III TCNNGA 9 cut(s) 16, 192, 316, 426, 742, 874, 1076, 1208, 1359
Hpy8I GTNNAC 2 cut(s) 834, 877
Hpy99I CGWCG 4 cut(s) 305, 371, 532, 1341
HpyAV CCTTC 7 cut(s) 88, 271, 361, 367, 499, 651, 1063
HpyCH4III ACNGT 1 cut(s) 838
HpyCH4V TGCA 7 cut(s) 671, 902, 988, 1060, 1111, 1141, 1344
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 722
HpyF3I CTNAG 3 cut(s) 551, 948, 1098
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 3 cut(s) 709, 1064, 1357
HspAI GCGC 2 cut(s) 386, 560
Kpn2I TCCGGA 1 cut(s) 191
KpnI GGTACC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 3 cut(s) 282, 748, 849
LmnI GCTCC 3 cut(s) 217, 225, 393
Lsp1109I GCAGC 5 cut(s) 474, 559, 950, 1000, 1328
LweI GCATC 2 cut(s) 762, 1209
MalI GATC 3 cut(s) 284, 750, 851
MboI GATC 3 cut(s) 282, 748, 849
MboII GAAGA 5 cut(s) 88, 91, 277, 730, 1223
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 4 cut(s) 11, 672, 814, 1009
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 369, 519
MroI TCCGGA 1 cut(s) 191
MspA1I CMGCKG 2 cut(s) 550, 991
MspI CCGG 8 cut(s) 147, 157, 192, 198, 215, 257, 289, 335
MspR9I CCNGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
Mva1269I GAATGC 1 cut(s) 873
MwoI GCNNNNNNNGC 2 cut(s) 377, 722
NciI CCSGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
NdeII GATC 3 cut(s) 282, 748, 849
NlaIII CATG 3 cut(s) 709, 1064, 1357
NlaIV GGNNCC 4 cut(s) 154, 196, 202, 1074
NspI RCATGY 2 cut(s) 1064, 1357
NspV TTCGAA 2 cut(s) 482, 895
PaeI GCATGC 1 cut(s) 1064
PciI ACATGT 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PctI GAATGC 1 cut(s) 873
PfeI GAWTC 7 cut(s) 28, 188, 407, 422, 826, 919, 1288
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 8 cut(s) 163, 489, 549, 715, 965, 990, 1005, 1343
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 1353
PshAI GACNNNNGTC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 222
PspFI CCCAGC 2 cut(s) 562, 1064
PspN4I GGNNCC 4 cut(s) 154, 196, 202, 1074
PspPI GGNCC 7 cut(s) 7, 159, 194, 201, 307, 759, 1302
PstI CTGCAG 2 cut(s) 990, 1143
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 2 cut(s) 550, 991
RsaI GTAC 2 cut(s) 154, 1352
RsaNI GTAC 2 cut(s) 153, 1351
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 8 cut(s) 162, 488, 548, 714, 964, 989, 1004, 1342
Sau3AI GATC 3 cut(s) 282, 748, 849
Sau96I GGNCC 7 cut(s) 7, 159, 194, 201, 307, 759, 1302
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 8 cut(s) 147, 157, 158, 198, 199, 215, 257, 335
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 2 cut(s) 762, 1209
SfcI CTRYAG 2 cut(s) 986, 1139
SfuI TTCGAA 2 cut(s) 482, 895
SinI GGWCC 4 cut(s) 7, 194, 201, 759
SmaI CCCGGG 2 cut(s) 158, 199
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 1064
Sse9I AATT 4 cut(s) 11, 672, 814, 1009
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 8 cut(s) 145, 155, 156, 196, 197, 213, 255, 333
TaaI ACNGT 1 cut(s) 838
TaqI TCGA 7 cut(s) 264, 300, 482, 530, 770, 895, 977
TasI AATT 4 cut(s) 11, 672, 814, 1009
TatI WGTACW 1 cut(s) 1350
TauI GCSGC 3 cut(s) 164, 716, 1006
TfiI GAWTC 7 cut(s) 28, 188, 407, 422, 826, 919, 1288
TseI GCWGC 5 cut(s) 487, 547, 963, 988, 1341
TspDTI ATGAA 2 cut(s) 282, 694
TspGWI ACGGA 1 cut(s) 846
TspMI CCCGGG 2 cut(s) 156, 197
VpaK11BI GGWCC 4 cut(s) 7, 194, 201, 759
XapI RAATTY 1 cut(s) 1009
XceI RCATGY 2 cut(s) 1064, 1357
XmaI CCCGGG 2 cut(s) 156, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.