Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019868

Physical Location & Seq

Genomic Coordinates Reverse (-)

8556427 .. 8558095

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGTCAACAAAAAGATGCTCCCGCATCAATGATAAACACATGTAATGGCTGGTATTGTGACACATTCAAGCCAAGTAACCCCAACACTCCTAAGATGTGGACTGAAAATTGGATTGGCTGGTTCAAGAGCTGGGGTGGTTTAGACCCCCTCAGGACTGTTGAGGACGTTGGCTTAGCAGTAGCAAGGTTTTTCCAATTTGAAGGCACATTCCAAAACTATTACATGGTAAACACCCAAACTACAGTGAAAGTAAAAAGTGTTAACAAGGCTGTGGATGAACCTGAATCCCTTCATTGGTCATGGAGGCCTGAGAAGACGGATGACACCCAGCTTCTTGGAAAAGGTGAAGTTGATGATCCAATTTTGAGTGGGAACATGACACTGATGATAAATGAAACTGGTTACATTCTTCATGCTTATGTTAATGGAGAACATAAACCTATCAGGTTGGTTCCCGGAGTGAACACAATTTCATTGCTCAGTGCTACTGTTGGATTTCCGGTTCGTGCCAATTATGACAGGATCCGGCCCGGATTTCACCCTGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

184

Amino Acids

20.89

Weight (kDa)

5.79

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	1 - 77	8e-13	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019868)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095601 RchiOBHm_Chr2g0095621
rosa_multiflora	Rmu_co8127886.1_g000001 Rmu_sc0003026.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146160
rosa_samantha	Rh2AG100500 Rh2DG101600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	353, 520, 533
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	70, 127, 203
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	132, 334
AluI	AGCT	2 cut(s)	132, 334
AlwI	GGATC	3 cut(s)	353, 520, 533
AoxI	GGCC	2 cut(s)	308, 530
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	2 cut(s)	459, 534
AsuHPI	GGTGA	2 cut(s)	359, 533
AxyI	CCTNAGG	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	323
BcnI	CCSGG	2 cut(s)	459, 534
BfmI	CTRYAG	1 cut(s)	243
BlpI	GCTNAGC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	459, 534
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	2 cut(s)	456, 527
BmrFI	CCNGG	2 cut(s)	459, 534
BmsI	GCATC	2 cut(s)	7, 35
BpiI	GAAGAC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	459, 534
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	476
BseGI	GGATG	2 cut(s)	283, 328
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	3 cut(s)	166, 303, 496
BseNI	ACTGG	1 cut(s)	406
BseYI	CCCAGC	2 cut(s)	132, 330
BshFI	GGCC	2 cut(s)	310, 532
BsiSI	CCGG	4 cut(s)	459, 503, 529, 534
BslI	CCNNNNNNNGG	1 cut(s)	297
BsnI	GGCC	2 cut(s)	310, 532
Bsp143I	GATC	2 cut(s)	358, 525
Bsp1720I	GCTNAGC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	310, 532
BspCNI	CTCAG	3 cut(s)	165, 304, 495
BspLI	GGNNCC	2 cut(s)	456, 527
BspPI	GGATC	3 cut(s)	353, 520, 533
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	358, 525
Bst4CI	ACNGT	3 cut(s)	160, 247, 493
BstDEI	CTNAG	5 cut(s)	93, 152, 175, 312, 482
BstF5I	GGATG	2 cut(s)	283, 328
BstKTI	GATC	2 cut(s)	361, 528
BstMBI	GATC	2 cut(s)	358, 525
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	457, 532
BstSFI	CTRYAG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	525
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	310, 532
BtsCI	GGATG	2 cut(s)	283, 328
BtsIMutI	CAGTG	3 cut(s)	252, 383, 490
Cfr13I	GGNCC	1 cut(s)	531
CviAII	CATG	5 cut(s)	42, 226, 303, 379, 416
CviJI	RGCY	9 cut(s)	51, 73, 120, 132, 174, 272, 310, 334, 532
CviKI_1	RGCY	9 cut(s)	51, 73, 120, 132, 174, 272, 310, 334, 532
DdeI	CTNAG	5 cut(s)	93, 152, 175, 312, 482
DpnI	GATC	2 cut(s)	360, 527
DpnII	GATC	2 cut(s)	358, 525
Eco147I	AGGCCT	1 cut(s)	310
Eco81I	CCTNAGG	1 cut(s)	152
FaeI	CATG	5 cut(s)	45, 229, 306, 382, 419
FaiI	YATR	8 cut(s)	43, 227, 304, 380, 417, 423, 438, 519
FatI	CATG	5 cut(s)	41, 225, 302, 378, 415
FauI	CCCGC	1 cut(s)	31
FokI	GGATG	2 cut(s)	290, 335
GsaI	CCCAGC	2 cut(s)	136, 334
HaeIII	GGCC	2 cut(s)	310, 532
HapII	CCGG	4 cut(s)	459, 503, 529, 534
Hin1II	CATG	5 cut(s)	45, 229, 306, 382, 419
HincII	GTYRAC	2 cut(s)	8, 265
HindII	GTYRAC	2 cut(s)	8, 265
HinfI	GANTC	1 cut(s)	287
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	4 cut(s)	459, 503, 529, 534
HphI	GGTGA	2 cut(s)	359, 533
Hpy166II	GTNNAC	5 cut(s)	8, 102, 232, 265, 466
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	2 cut(s)	127, 154
Hpy8I	GTNNAC	5 cut(s)	8, 102, 232, 265, 466
HpyAV	CCTTC	2 cut(s)	197, 302
HpyCH4III	ACNGT	3 cut(s)	160, 247, 493
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	5 cut(s)	93, 152, 175, 312, 482
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	45, 229, 306, 382, 419
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	358, 525
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	2 cut(s)	7, 35
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	59, 77, 404
MalI	GATC	2 cut(s)	360, 527
MboI	GATC	2 cut(s)	358, 525
MboII	GAAGA	2 cut(s)	328, 404
MflI	RGATCY	1 cut(s)	525
MluCI	AATT	5 cut(s)	109, 197, 363, 471, 514
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	3 cut(s)	157, 161, 300
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	264, 426
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	4 cut(s)	459, 503, 529, 534
MspR9I	CCNGG	2 cut(s)	459, 534
NciI	CCSGG	2 cut(s)	459, 534
NdeII	GATC	2 cut(s)	358, 525
NlaIII	CATG	5 cut(s)	45, 229, 306, 382, 419
NlaIV	GGNNCC	2 cut(s)	456, 527
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	310
PciI	ACATGT	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	457
PscI	ACATGT	1 cut(s)	41
PspFI	CCCAGC	2 cut(s)	132, 330
PspN4I	GGNNCC	2 cut(s)	456, 527
PspPI	GGNCC	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	264, 426
Sau3AI	GATC	2 cut(s)	358, 525
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	459, 534
SetI	ASST	8 cut(s)	134, 171, 191, 286, 336, 349, 445, 452
SfaNI	GCATC	2 cut(s)	7, 35
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	5 cut(s)	109, 197, 363, 471, 514
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	457, 532
TaaI	ACNGT	3 cut(s)	160, 247, 493
TaiI	ACGT	1 cut(s)	171
TasI	AATT	5 cut(s)	109, 197, 363, 471, 514
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	264, 426
Tru9I	TTAA	2 cut(s)	264, 426
TscAI	CASTG	3 cut(s)	252, 390, 490
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	284, 294, 404, 411, 465
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	252, 390, 490
XceI	RCATGY	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.