Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019868

Physical Location & Seq

Genomic Coordinates Forward (+)

84080334 .. 84086994

Gene Structure 6661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTGGTGGTGTGGCTCGATTTTCACCCGAGATTGAAGGATGCGGGGTGCGAGCGGGAGCTGCGGCGATGGTGCGTGCTTGGGTTTTTCGACTATGGCATACATCAAGGTACTCTAAACGACCTCTGTTGTGCGAATGCAGATGTGGCTAGACTTATTAGGAAGTCAAAGGAAGGTGGACTCGATGCAATTGAGACTTATGTCTTATGGAATGCGCATGAACCAGTTTGTCGTGAGTATGATTTTACTGGTAATCTTGACCTGGTATGTACAAATGGGAATGTGGAATCATACTATGGAGATGCTGGAAAAGCATACATTAACTGGTCTGCAAATTTTGCTGAATCACTAAACATCAGAGTTCCATGGATTATGCGTCAACAAAAAGATGCTCCCGCATCAATGATAAACACATGTAATGGTTGGTATTGTGACACATTCAAACCAAGTAACCCCAACACTCCTAAGAAGTGGATTGAAAATTGGACTGGCTGGTTCAAGACCTGGGGTGCTTTAGACCCACTCAGGACTGCTGAGGATGTTGCCTTTGCAGTAGCAAGGTTTTTCCAATTTGGAGGCACATTCCAAAACTATTACATGACCACTGTGTTTGCGACAAGTGAGTCAAGTAGCTGCATTTTTGGCAATGCAAAAAACAGTTCAGATACTACAATCACTTTCCAAGGAAACACATACACCATTCCTGCTTGGTCTGTTAGTATTCTTCCTGATTGCAAAAAAGAAGCATACAACACTGCTAAGGTAAACACCCAAACTACAATGAAAGTAAAAAGTGTTAACAAGGCTGTGGATGTACCTGAATCCCTTCATTGGTCATGGAGGCCCGAGAAGACGGATGACGCCCAGCTTCTTGGAAAAGGTGAAGTTGTGGAAAATCATCTTATGGAACAAAAAGATGCTGCAAATGATGCTAGTGATTATCTTTGGTATATGACAAGTGGAGATGAAACTGTGATCAAGGATTTGTCAGAACACAAATGGTCATACAAGGTCGCACTCCATGGCTTGAAAGACGAGCTCTTTAGCTCTGCTTCTCGTTTTGCAACTAAATGGTCAGTTGAAGGATTACCTGTAAACAGGATGATGACATGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

372

Amino Acids

42.37

Weight (kDa)

5.59

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	50 - 89	2.1e-09	Glycosyl hydrolases family 35
Glyco_hydro_35	PF01301	96 - 201	2.4e-17	Glycosyl hydrolases family 35
GHD	PF17834	202 - 255	1.4e-20	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019868)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095601 RchiOBHm_Chr2g0095621
rosa_multiflora	Rmu_co8127886.1_g000001 Rmu_sc0003026.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146160
rosa_samantha	Rh2AG100500 Rh2DG101600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
Acc16I	TGCGCA	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	4 cut(s)	44, 55, 64, 396
AcsI	RAATTY	1 cut(s)	334
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	3 cut(s)	112, 271, 816
AfiI	CCNNNNNNNGG	1 cut(s)	831
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	37, 442, 479, 499, 1030, 1082
AjnI	CCWGG	2 cut(s)	261, 503
AluBI	AGCT	5 cut(s)	61, 633, 868, 1039, 1047
AluI	AGCT	5 cut(s)	61, 633, 868, 1039, 1047
Alw21I	GWGCWC	1 cut(s)	1041
Alw26I	GTCTC	1 cut(s)	188
Ama87I	CYCGRG	2 cut(s)	28, 845
AoxI	GGCC	1 cut(s)	842
ApeKI	GCWGC	3 cut(s)	61, 633, 920
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	843
AsuHPI	GGTGA	2 cut(s)	17, 893
AvaI	CYCGRG	2 cut(s)	28, 845
BanII	GRGCYC	1 cut(s)	1041
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	1 cut(s)	1041
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	48, 620, 907
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	263, 505
BclI	TGATCA	1 cut(s)	975
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	150, 933
BisI	GCNGC	4 cut(s)	62, 65, 634, 921
BlsI	GCNGC	4 cut(s)	63, 66, 635, 922
Bme1390I	CCNGG	2 cut(s)	263, 505
BmeT110I	CYCGRG	2 cut(s)	28, 845
BmgT120I	GGNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	263, 505
BmsI	GCATC	7 cut(s)	31, 175, 292, 379, 407, 907, 919
BoxI	GACNNNNGTC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	857
Bpu10I	CCTNAGC	2 cut(s)	534, 759
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	4 cut(s)	365, 504, 682, 1021
Bsc4I	CCNNNNNNNGG	1 cut(s)	831
Bse1I	ACTGG	4 cut(s)	224, 253, 329, 493
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	2 cut(s)	263, 505
BseDI	CCNNGG	4 cut(s)	365, 504, 682, 1021
BseGI	GGATG	5 cut(s)	46, 544, 817, 862, 1107
BseLI	CCNNNNNNNGG	1 cut(s)	831
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	525, 538
BseNI	ACTGG	4 cut(s)	224, 253, 329, 493
BseXI	GCAGC	3 cut(s)	48, 620, 907
BseYI	CCCAGC	1 cut(s)	864
BshFI	GGCC	1 cut(s)	844
BsiHKAI	GWGCWC	1 cut(s)	1041
BsiHKCI	CYCGRG	2 cut(s)	28, 845
BslI	CCNNNNNNNGG	1 cut(s)	831
BsmAI	GTCTC	1 cut(s)	188
BsmI	GAATGC	2 cut(s)	142, 217
BsnI	GGCC	1 cut(s)	844
BsoBI	CYCGRG	2 cut(s)	28, 845
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp1407I	TGTACA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	975
Bsp19I	CCATGG	2 cut(s)	365, 1021
BspACI	CCGC	4 cut(s)	44, 55, 64, 396
BspANI	GGCC	1 cut(s)	844
BspCNI	CTCAG	2 cut(s)	526, 537
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	224, 253, 329, 493
BssECI	CCNNGG	4 cut(s)	365, 504, 682, 1021
BssMI	GATC	1 cut(s)	975
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	3 cut(s)	365, 682, 1021
Bst2UI	CCWGG	2 cut(s)	263, 505
Bst4CI	ACNGT	3 cut(s)	607, 659, 973
BstACI	GRCGYC	1 cut(s)	861
BstAPI	GCANNNNNTGC	2 cut(s)	338, 929
BstAUI	TGTACA	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	53, 77
BstDEI	CTNAG	4 cut(s)	465, 524, 534, 759
BstDSI	CCRYGG	2 cut(s)	365, 1021
BstF5I	GGATG	5 cut(s)	46, 544, 817, 862, 1107
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	978
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	975
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 146, 311, 338, 642, 929
BstNI	CCWGG	2 cut(s)	263, 505
BstNSI	RCATGY	1 cut(s)	417
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	261, 503
BstV1I	GCAGC	3 cut(s)	48, 620, 907
BstV2I	GAAGAC	1 cut(s)	857
BstXI	CCANNNNNNTGG	1 cut(s)	872
BsuRI	GGCC	1 cut(s)	844
BtgI	CCRYGG	2 cut(s)	365, 1021
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	5 cut(s)	46, 544, 817, 862, 1107
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	603, 753
Cac8I	GCNNGC	2 cut(s)	53, 77
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	843
CseI	GACGC	2 cut(s)	365, 869
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	111, 270, 815
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	7 cut(s)	218, 366, 414, 598, 837, 1022, 1110
CviQI	GTAC	3 cut(s)	111, 270, 815
DdeI	CTNAG	4 cut(s)	465, 524, 534, 759
DpnI	GATC	1 cut(s)	977
DpnII	GATC	1 cut(s)	975
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
Ecl136II	GAGCTC	1 cut(s)	1039
Eco130I	CCWWGG	3 cut(s)	365, 682, 1021
Eco24I	GRGCYC	1 cut(s)	1041
Eco53kI	GAGCTC	1 cut(s)	1039
Eco88I	CYCGRG	2 cut(s)	28, 845
EcoICRI	GAGCTC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	261, 503
EcoT14I	CCWWGG	3 cut(s)	365, 682, 1021
EcoT38I	GRGCYC	1 cut(s)	1041
ErhI	CCWWGG	3 cut(s)	365, 682, 1021
FaeI	CATG	7 cut(s)	221, 369, 417, 601, 840, 1025, 1113
FatI	CATG	7 cut(s)	217, 365, 413, 597, 836, 1021, 1109
FauI	CCCGC	3 cut(s)	37, 48, 403
FbaI	TGATCA	1 cut(s)	975
Fnu4HI	GCNGC	4 cut(s)	62, 65, 634, 921
FokI	GGATG	5 cut(s)	53, 551, 824, 869, 1114
FriOI	GRGCYC	1 cut(s)	1041
Fsp4HI	GCNGC	4 cut(s)	62, 65, 634, 921
FspAI	RTGCGCAY	1 cut(s)	216
FspBI	CTAG	2 cut(s)	150, 933
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	62, 65, 634, 921
GsaI	CCCAGC	1 cut(s)	868
HaeIII	GGCC	1 cut(s)	844
HgaI	GACGC	2 cut(s)	365, 869
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	7 cut(s)	221, 369, 417, 601, 840, 1025, 1113
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	380, 799
HindII	GTYRAC	2 cut(s)	380, 799
HinfI	GANTC	5 cut(s)	180, 287, 344, 623, 821
HpaI	GTTAAC	1 cut(s)	799
HphI	GGTGA	2 cut(s)	17, 893
Hpy166II	GTNNAC	5 cut(s)	179, 380, 766, 799, 1096
Hpy188I	TCNGA	3 cut(s)	359, 664, 991
Hpy188III	TCNNGA	5 cut(s)	233, 257, 499, 526, 728
Hpy8I	GTNNAC	5 cut(s)	179, 380, 766, 799, 1096
HpyAV	CCTTC	4 cut(s)	31, 167, 836, 1076
HpyCH4III	ACNGT	3 cut(s)	607, 659, 973
HpyCH4V	TGCA	9 cut(s)	140, 188, 332, 551, 636, 650, 735, 923, 1064
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 146, 311, 338, 642, 929
HpyF3I	CTNAG	4 cut(s)	465, 524, 534, 759
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	7 cut(s)	221, 369, 417, 601, 840, 1025, 1113
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	975
KspAI	GTTAAC	1 cut(s)	799
Kzo9I	GATC	1 cut(s)	975
LmnI	GCTCC	2 cut(s)	58, 397
Lsp1109I	GCAGC	3 cut(s)	48, 620, 907
LweI	GCATC	7 cut(s)	31, 175, 292, 379, 407, 907, 919
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	2 cut(s)	150, 933
MaeIII	GTNAC	2 cut(s)	431, 449
MalI	GATC	1 cut(s)	977
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	975
MboII	GAAGA	2 cut(s)	716, 862
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	1041
MluCI	AATT	4 cut(s)	189, 334, 481, 569
MlyI	GAGTC	2 cut(s)	174, 632
MnlI	CCTC	4 cut(s)	134, 529, 569, 834
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	2 cut(s)	321, 798
MspR9I	CCNGG	2 cut(s)	263, 505
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	142, 217
MvaI	CCWGG	2 cut(s)	263, 505
MwoI	GCNNNNNNNGC	6 cut(s)	61, 146, 311, 338, 642, 929
NcoI	CCATGG	2 cut(s)	365, 1021
NdeII	GATC	1 cut(s)	975
NlaIII	CATG	7 cut(s)	221, 369, 417, 601, 840, 1025, 1113
NmuCI	GTSAC	1 cut(s)	431
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PctI	GAATGC	2 cut(s)	142, 217
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	287, 344, 821
PkrI	GCNGC	4 cut(s)	63, 66, 635, 922
PleI	GAGTC	2 cut(s)	174, 631
PpsI	GAGTC	2 cut(s)	174, 631
PscI	ACATGT	1 cut(s)	413
PshAI	GACNNNNGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	1041
Psp6I	CCWGG	2 cut(s)	261, 503
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	2 cut(s)	261, 503
PspPI	GGNCC	1 cut(s)	843
RsaI	GTAC	3 cut(s)	112, 271, 816
RsaNI	GTAC	3 cut(s)	111, 270, 815
SacI	GAGCTC	1 cut(s)	1041
SaqAI	TTAA	2 cut(s)	321, 798
SatI	GCNGC	4 cut(s)	62, 65, 634, 921
Sau3AI	GATC	1 cut(s)	975
Sau96I	GGNCC	1 cut(s)	843
SchI	GAGTC	2 cut(s)	174, 632
ScrFI	CCNGG	2 cut(s)	263, 505
SduI	GDGCHC	1 cut(s)	1041
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	7 cut(s)	31, 175, 292, 379, 407, 907, 919
Sse9I	AATT	4 cut(s)	189, 334, 481, 569
SsiI	CCGC	4 cut(s)	44, 55, 64, 396
SspMI	CTAG	2 cut(s)	150, 933
SstI	GAGCTC	1 cut(s)	1041
StyD4I	CCNGG	2 cut(s)	261, 503
StyI	CCWWGG	3 cut(s)	365, 682, 1021
TaaI	ACNGT	3 cut(s)	607, 659, 973
TaqI	TCGA	3 cut(s)	18, 90, 183
TasI	AATT	4 cut(s)	189, 334, 481, 569
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	287, 344, 821
Tru1I	TTAA	2 cut(s)	321, 798
Tru9I	TTAA	2 cut(s)	321, 798
TscAI	CASTG	2 cut(s)	610, 760
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	3 cut(s)	61, 633, 920
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	234, 797, 818, 981
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	2 cut(s)	610, 760
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	2 cut(s)	150, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.