Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003026.1

Orthogroup ID

OG0019868

Physical Location & Seq

Genomic Coordinates Forward (+)

8961 .. 10980

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003026.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaatgggaatgtggaatcatactatggagatgctggaaaagcatacattaactggtctgcaaattttgctgaatcactaaacatcggagttccatggattatgtgtcaacaatcaatgataaacacatgtaatggctggtattgtgacacattcaagccaagtaaccccaacactcctaagatgtggactgaaaattggactggctggttcaagagctggggtggttcagacccactcaggactgttgaggacgttgcctttgcagtagcaaggtttttccaatttgaaggcacattccaaaactattacatggtaaacacccaaactacagtgaaagtaaaaagtgttaacaaggctgtgggtgaacctgaatcccttcattggtcatggaggcccgagaagacggatgacacccagcttcttggaaaaggtgaagttgtggaaaatcatcttatggaacaaaaaatgctgcaaatgatgctagtgattatctttggttctcaatgggctgcttataacgtgttcaactacgttttcgagaaacctatcaggttggttcccggagtgaacacaatttcattgctcagtgctactgttggatttccggttcgtaccaattatgacaagacccgcccggatttcatcaccctaaaatctgaagtggccctacagggcccaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

228

Amino Acids

26.0

Weight (kDa)

5.75

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019868)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095601 RchiOBHm_Chr2g0095621
rosa_multiflora	Rmu_co8127886.1_g000001 Rmu_sc0003026.1_g000002
rosa_roxburghii	Rroxscaffold_2G00146160
rosa_samantha	Rh2AG100500 Rh2DG101600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AciI	CCGC	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	681
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	2 cut(s)	128, 522
AgsI	TTSAA	4 cut(s)	157, 214, 290, 529
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	2 cut(s)	219, 421
AluI	AGCT	2 cut(s)	219, 421
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	395, 666, 676
ApaI	GGGCCC	1 cut(s)	680
ApeKI	GCWGC	2 cut(s)	472, 512
ApoI	RAATTY	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	4 cut(s)	396, 667, 676, 677
AsuC2I	CCSGG	2 cut(s)	564, 638
AsuHPI	GGTGA	3 cut(s)	377, 446, 640
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	654, 686
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	459, 499
BcnI	CCSGG	2 cut(s)	564, 638
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	2 cut(s)	330, 671
BisI	GCNGC	2 cut(s)	473, 513
BlsI	GCNGC	2 cut(s)	474, 514
Bme1390I	CCNGG	2 cut(s)	564, 638
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	4 cut(s)	396, 667, 676, 677
BmiI	GGNNCC	2 cut(s)	561, 678
BmrFI	CCNGG	2 cut(s)	564, 638
BmsI	GCATC	2 cut(s)	22, 471
BpiI	GAAGAC	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	564, 638
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	59, 208
Bse3DI	GCAATG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	253, 601
BseNI	ACTGG	2 cut(s)	59, 208
BseSI	GKGCMC	1 cut(s)	680
BseXI	GCAGC	2 cut(s)	459, 499
BseYI	CCCAGC	2 cut(s)	219, 417
BshFI	GGCC	3 cut(s)	397, 668, 678
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	564, 608, 638
BslI	CCNNNNNNNGG	1 cut(s)	384
BsnI	GGCC	3 cut(s)	397, 668, 678
BsoBI	CYCGRG	1 cut(s)	398
Bsp120I	GGGCCC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	3 cut(s)	397, 668, 678
BspCNI	CTCAG	2 cut(s)	252, 600
BspLI	GGNNCC	2 cut(s)	561, 678
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	59, 208
BssECI	CCNNGG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	247, 334, 598
BstAPI	GCANNNNNTGC	2 cut(s)	68, 481
BstDEI	CTNAG	4 cut(s)	180, 239, 587, 684
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 68, 481
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	562, 636
BstSFI	CTRYAG	2 cut(s)	330, 671
BstSLI	GKGCMC	1 cut(s)	680
BstV1I	GCAGC	2 cut(s)	459, 499
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	397, 668, 678
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	339, 595
Cfr13I	GGNCC	4 cut(s)	396, 667, 676, 677
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	4 cut(s)	96, 129, 313, 390
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	4 cut(s)	180, 239, 587, 684
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	4 cut(s)	99, 132, 316, 393
FatI	CATG	4 cut(s)	95, 128, 312, 389
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	2 cut(s)	473, 513
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	2 cut(s)	473, 513
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	2 cut(s)	473, 513
GsaI	CCCAGC	2 cut(s)	223, 421
HaeIII	GGCC	3 cut(s)	397, 668, 678
HapII	CCGG	3 cut(s)	564, 608, 638
Hin1II	CATG	4 cut(s)	99, 132, 316, 393
HincII	GTYRAC	2 cut(s)	110, 352
HindII	GTYRAC	2 cut(s)	110, 352
HinfI	GANTC	3 cut(s)	17, 74, 374
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	564, 608, 638
HphI	GGTGA	3 cut(s)	377, 446, 640
Hpy166II	GTNNAC	6 cut(s)	110, 189, 319, 352, 368, 571
Hpy188I	TCNGA	3 cut(s)	89, 232, 661
Hpy188III	TCNNGA	3 cut(s)	214, 241, 541
Hpy8I	GTNNAC	6 cut(s)	110, 189, 319, 352, 368, 571
HpyAV	CCTTC	2 cut(s)	284, 389
HpyCH4III	ACNGT	3 cut(s)	247, 334, 598
HpyCH4IV	ACGT	3 cut(s)	255, 522, 534
HpyCH4V	TGCA	3 cut(s)	62, 266, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 68, 481
HpyF3I	CTNAG	4 cut(s)	180, 239, 587, 684
HpySE526I	ACGT	3 cut(s)	255, 522, 534
Hsp92II	CATG	4 cut(s)	99, 132, 316, 393
KspAI	GTTAAC	1 cut(s)	352
Lsp1109I	GCAGC	2 cut(s)	459, 499
LweI	GCATC	2 cut(s)	22, 471
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	3 cut(s)	255, 522, 534
MaeIII	GTNAC	2 cut(s)	146, 164
MboII	GAAGA	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	5 cut(s)	64, 196, 284, 576, 619
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	2 cut(s)	244, 387
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	51, 351
MspI	CCGG	3 cut(s)	564, 608, 638
MspR9I	CCNGG	2 cut(s)	564, 638
MwoI	GCNNNNNNNGC	3 cut(s)	41, 68, 481
NciI	CCSGG	2 cut(s)	564, 638
NcoI	CCATGG	1 cut(s)	95
NlaIII	CATG	4 cut(s)	99, 132, 316, 393
NlaIV	GGNNCC	2 cut(s)	561, 678
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	132
PciI	ACATGT	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	17, 74, 374
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	474, 514
PscI	ACATGT	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	519
PspFI	CCCAGC	2 cut(s)	219, 417
PspN4I	GGNNCC	2 cut(s)	561, 678
PspOMI	GGGCCC	1 cut(s)	676
PspPI	GGNCC	4 cut(s)	396, 667, 676, 677
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	51, 351
SatI	GCNGC	2 cut(s)	473, 513
Sau96I	GGNCC	4 cut(s)	396, 667, 676, 677
ScrFI	CCNGG	2 cut(s)	564, 638
SduI	GDGCHC	1 cut(s)	680
SfaNI	GCATC	2 cut(s)	22, 471
SfcI	CTRYAG	2 cut(s)	330, 671
Sse9I	AATT	5 cut(s)	64, 196, 284, 576, 619
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	2 cut(s)	562, 636
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	3 cut(s)	247, 334, 598
TaiI	ACGT	3 cut(s)	258, 525, 537
TaqI	TCGA	1 cut(s)	540
TasI	AATT	5 cut(s)	64, 196, 284, 576, 619
TfiI	GAWTC	3 cut(s)	17, 74, 374
Tru1I	TTAA	2 cut(s)	51, 351
Tru9I	TTAA	2 cut(s)	51, 351
TscAI	CASTG	2 cut(s)	339, 595
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	472, 512
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	17, 371, 570, 634
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	339, 595
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.