RNA polymerase I-specific transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0096821 RchiOBHm_Chr2g0096831 |
| rosa_samantha | Rh2AG108700 Rh2BG110700 Rh2CG112600 Rh2CG112700 Rh2DG112000 |
| rosa_wichuraiana | Rw2G008400 Rw2G008410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 26 |
| AciI | CCGC | 2 cut(s) | 14, 77 |
| AclWI | GGATC | 1 cut(s) | 5 |
| AcsI | RAATTY | 1 cut(s) | 68 |
| AcuI | CTGAAG | 1 cut(s) | 101 |
| AcyI | GRCGYC | 1 cut(s) | 23 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 82 |
| AluBI | AGCT | 1 cut(s) | 134 |
| AluI | AGCT | 1 cut(s) | 134 |
| AlwI | GGATC | 1 cut(s) | 5 |
| AoxI | GGCC | 1 cut(s) | 37 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| ApoI | RAATTY | 1 cut(s) | 68 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| BsaHI | GRCGYC | 1 cut(s) | 23 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 82 |
| Bse1I | ACTGG | 1 cut(s) | 40 |
| BseGI | GGATG | 1 cut(s) | 13 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 82 |
| BseNI | ACTGG | 1 cut(s) | 40 |
| BshFI | GGCC | 1 cut(s) | 39 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 82 |
| BsmI | GAATGC | 1 cut(s) | 133 |
| BsnI | GGCC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 10 |
| BspACI | CCGC | 2 cut(s) | 14, 77 |
| BspANI | GGCC | 1 cut(s) | 39 |
| BspPI | GGATC | 1 cut(s) | 5 |
| BsrI | ACTGG | 1 cut(s) | 40 |
| BssMI | GATC | 1 cut(s) | 10 |
| BssNI | GRCGYC | 1 cut(s) | 23 |
| BstACI | GRCGYC | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 77 |
| BstF5I | GGATG | 1 cut(s) | 13 |
| BstKTI | GATC | 1 cut(s) | 13 |
| BstMBI | GATC | 1 cut(s) | 10 |
| BstNSI | RCATGY | 1 cut(s) | 90 |
| BsuRI | GGCC | 1 cut(s) | 39 |
| BtsCI | GGATG | 1 cut(s) | 13 |
| Cac8I | GCNNGC | 1 cut(s) | 77 |
| CviAII | CATG | 1 cut(s) | 87 |
| CviJI | RGCY | 3 cut(s) | 39, 75, 134 |
| CviKI_1 | RGCY | 3 cut(s) | 39, 75, 134 |
| DpnI | GATC | 1 cut(s) | 12 |
| DpnII | GATC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 101 |
| FaeI | CATG | 1 cut(s) | 90 |
| FaiI | YATR | 2 cut(s) | 88, 101 |
| FatI | CATG | 1 cut(s) | 86 |
| FauI | CCCGC | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| FokI | GGATG | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 39 |
| Hin1I | GRCGYC | 1 cut(s) | 23 |
| Hin1II | CATG | 1 cut(s) | 90 |
| HincII | GTYRAC | 1 cut(s) | 21 |
| HindII | GTYRAC | 1 cut(s) | 21 |
| HinfI | GANTC | 1 cut(s) | 50 |
| Hpy166II | GTNNAC | 1 cut(s) | 21 |
| Hpy8I | GTNNAC | 1 cut(s) | 21 |
| HpyAV | CCTTC | 4 cut(s) | 50, 76, 100, 105 |
| HpyCH4IV | ACGT | 1 cut(s) | 23 |
| HpyCH4V | TGCA | 1 cut(s) | 131 |
| HpySE526I | ACGT | 1 cut(s) | 23 |
| Hsp92I | GRCGYC | 1 cut(s) | 23 |
| Hsp92II | CATG | 1 cut(s) | 90 |
| Kzo9I | GATC | 1 cut(s) | 10 |
| LpnPI | CCDG | 2 cut(s) | 21, 120 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeII | ACGT | 1 cut(s) | 23 |
| MalI | GATC | 1 cut(s) | 12 |
| MboI | GATC | 1 cut(s) | 10 |
| MluCI | AATT | 1 cut(s) | 68 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MseI | TTAA | 2 cut(s) | 66, 139 |
| MspA1I | CMGCKG | 2 cut(s) | 79, 134 |
| Mva1269I | GAATGC | 1 cut(s) | 133 |
| NdeII | GATC | 1 cut(s) | 10 |
| NlaIII | CATG | 1 cut(s) | 90 |
| NspI | RCATGY | 1 cut(s) | 90 |
| PctI | GAATGC | 1 cut(s) | 133 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 58 |
| PpsI | GAGTC | 1 cut(s) | 58 |
| PvuII | CAGCTG | 1 cut(s) | 134 |
| SaqAI | TTAA | 2 cut(s) | 66, 139 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 1 cut(s) | 10 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SetI | ASST | 2 cut(s) | 26, 136 |
| SgeI | CNNG | 5 cut(s) | 48, 88, 99, 128, 134 |
| Sse9I | AATT | 1 cut(s) | 68 |
| SsiI | CCGC | 2 cut(s) | 14, 77 |
| SspMI | CTAG | 1 cut(s) | 116 |
| TaiI | ACGT | 1 cut(s) | 26 |
| TasI | AATT | 1 cut(s) | 68 |
| Tru1I | TTAA | 2 cut(s) | 66, 139 |
| Tru9I | TTAA | 2 cut(s) | 66, 139 |
| TseI | GCWGC | 1 cut(s) | 131 |
| XapI | RAATTY | 1 cut(s) | 68 |
| XceI | RCATGY | 1 cut(s) | 90 |
| XspI | CTAG | 1 cut(s) | 116 |
| ZraI | GACGTC | 1 cut(s) | 24 |