Rw2G008410

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018982
Physical Location & Seq
Reverse (-)
8338525 .. 8341594
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008410.1

Sequence Viewer

Length: 441 bp
ATGCGTAGAGAACATGCTAAAGTTGGAGAGCGGTGCGCTTGGCTAAGTTGTTCGGGTCTCAGTGGTCACATATGTTGTGCAACTGCTGCTAGATTTGGATTTGGAAATTGGATCATTGAAGAATTCTCACAAGATCATGGACTATTTCAGATGGAGCTGGAACATCTTTATCTGAATGATGGTAGTGAGCTTCCCAGAGAAGACACTAAAAATGAGGTATTTGAAACTCTGCTCAAGTCATTTAAGAAGAATGTAATGACTGCATTCAAGTCAAAATTTGTCCAGTTTGTGATGTTTTATGCATGTGAACTCAATCCATCAACTGTGGTGAGAGATTTGCTTCCACGCTTGCAGAAATTTTGTATTCGCCCTCCGAACTCACACGTGTTAGTTTGGTGGATTGGTGTAACGAATATGTCAAAGAGCAAGATGGTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

146

Amino Acids

16.9

Weight (kDa)

8.79

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRN3 PF05327 63 - 126 9.6e-12 RNA polymerase I specific transcription initiation factor RRN3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018982)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0096821 RchiOBHm_Chr2g0096831
rosa_samantha Rh2AG108700 Rh2BG110700 Rh2CG112600 Rh2CG112700 Rh2DG112000
rosa_wichuraiana Rw2G008400 Rw2G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 3 cut(s) 122, 275, 356
AcvI CACGTG 1 cut(s) 385
AflIII ACRYGT 2 cut(s) 382, 384
AgsI TTSAA 3 cut(s) 119, 224, 268
AluBI AGCT 2 cut(s) 157, 190
AluI AGCT 2 cut(s) 157, 190
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 3 cut(s) 122, 275, 356
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 73
BccI CCATC 4 cut(s) 145, 173, 325, 424
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 111, 133
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 283
BssMI GATC 2 cut(s) 111, 133
Bst4CI ACNGT 1 cut(s) 325
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 44, 59
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 114, 136
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 111, 133
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 2 cut(s) 17, 306
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 38
CviAII CATG 3 cut(s) 14, 137, 303
CviJI RGCY 3 cut(s) 43, 157, 190
CviKI_1 RGCY 3 cut(s) 43, 157, 190
DdeI CTNAG 2 cut(s) 44, 59
DpnI GATC 2 cut(s) 113, 135
DpnII GATC 2 cut(s) 111, 133
Eco31I GGTCTC 1 cut(s) 62
Eco72I CACGTG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 3 cut(s) 17, 140, 306
FaiI YATR 7 cut(s) 15, 71, 73, 138, 300, 304, 416
FatI CATG 3 cut(s) 13, 136, 302
FauNDI CATATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 90
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 17, 140, 306
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 150, 174, 375
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 4 cut(s) 80, 263, 302, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 44, 59
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 17, 140, 306
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 111, 133
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 143, 208, 296
Lsp1109I GCAGC 1 cut(s) 73
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 65, 406
MalI GATC 2 cut(s) 113, 135
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 111, 133
MboII GAAGA 3 cut(s) 131, 212, 259
MluCI AATT 4 cut(s) 106, 122, 275, 356
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 2 cut(s) 208, 381
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 71
NdeII GATC 2 cut(s) 111, 133
NlaIII CATG 3 cut(s) 17, 140, 306
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 2 cut(s) 17, 306
PctI GAATGC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 385
PmlI CACGTG 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 385
PspCI CACGTG 1 cut(s) 385
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 111, 133
SetI ASST 4 cut(s) 159, 192, 219, 387
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 106, 122, 275, 356
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 387
TasI AATT 4 cut(s) 106, 122, 275, 356
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 65
TspRI CASTG 1 cut(s) 67
XapI RAATTY 3 cut(s) 122, 275, 356
XceI RCATGY 2 cut(s) 17, 306
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.