RNA polymerase I-specific transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0096821 RchiOBHm_Chr2g0096831 |
| rosa_samantha | Rh2AG108700 Rh2BG110700 Rh2CG112600 Rh2CG112700 Rh2DG112000 |
| rosa_wichuraiana | Rw2G008400 Rw2G008410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 6 |
| AclWI | GGATC | 1 cut(s) | 53 |
| AcsI | RAATTY | 2 cut(s) | 20, 101 |
| AcvI | CACGTG | 1 cut(s) | 130 |
| AflIII | ACRYGT | 2 cut(s) | 127, 129 |
| AgsI | TTSAA | 1 cut(s) | 13 |
| AluBI | AGCT | 1 cut(s) | 241 |
| AluI | AGCT | 1 cut(s) | 241 |
| Alw26I | GTCTC | 1 cut(s) | 306 |
| AlwI | GGATC | 1 cut(s) | 53 |
| ApoI | RAATTY | 2 cut(s) | 20, 101 |
| AsuHPI | GGTGA | 1 cut(s) | 85 |
| BbrPI | CACGTG | 1 cut(s) | 130 |
| BccI | CCATC | 4 cut(s) | 70, 173, 289, 352 |
| BcoDI | GTCTC | 1 cut(s) | 306 |
| BmiI | GGNNCC | 1 cut(s) | 262 |
| BsaAI | YACGTR | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseDI | CCNNGG | 1 cut(s) | 202 |
| BseGI | GGATG | 1 cut(s) | 300 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BsmAI | GTCTC | 1 cut(s) | 306 |
| BsmI | GAATGC | 1 cut(s) | 8 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| Bsp19I | CCATGG | 1 cut(s) | 202 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspLI | GGNNCC | 1 cut(s) | 262 |
| BspPI | GGATC | 1 cut(s) | 53 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 202 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssT1I | CCWWGG | 1 cut(s) | 202 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| BstBAI | YACGTR | 1 cut(s) | 130 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 227 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstF5I | GGATG | 1 cut(s) | 300 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMAI | GTCTC | 1 cut(s) | 306 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstNSI | RCATGY | 2 cut(s) | 51, 225 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsCI | GGATG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 227 |
| CviAII | CATG | 5 cut(s) | 48, 203, 222, 315, 328 |
| CviJI | RGCY | 2 cut(s) | 241, 268 |
| CviKI_1 | RGCY | 2 cut(s) | 241, 268 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| Eco130I | CCWWGG | 1 cut(s) | 202 |
| Eco72I | CACGTG | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 1 cut(s) | 202 |
| EcoT22I | ATGCAT | 2 cut(s) | 49, 320 |
| ErhI | CCWWGG | 1 cut(s) | 202 |
| FaeI | CATG | 5 cut(s) | 51, 206, 225, 318, 331 |
| FatI | CATG | 5 cut(s) | 47, 202, 221, 314, 327 |
| FokI | GGATG | 1 cut(s) | 307 |
| Hin1II | CATG | 5 cut(s) | 51, 206, 225, 318, 331 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HphI | GGTGA | 1 cut(s) | 85 |
| Hpy166II | GTNNAC | 1 cut(s) | 53 |
| Hpy188I | TCNGA | 2 cut(s) | 120, 367 |
| Hpy8I | GTNNAC | 1 cut(s) | 53 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 3 cut(s) | 47, 97, 318 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 5 cut(s) | 51, 206, 225, 318, 331 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LpnPI | CCDG | 6 cut(s) | 41, 207, 215, 239, 275, 282 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MaeIII | GTNAC | 1 cut(s) | 155 |
| MalI | GATC | 1 cut(s) | 60 |
| MboI | GATC | 1 cut(s) | 58 |
| MluCI | AATT | 2 cut(s) | 20, 101 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MnlI | CCTC | 1 cut(s) | 126 |
| Mph1103I | ATGCAT | 2 cut(s) | 49, 320 |
| Mva1269I | GAATGC | 1 cut(s) | 8 |
| NcoI | CCATGG | 1 cut(s) | 202 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 5 cut(s) | 51, 206, 225, 318, 331 |
| NlaIV | GGNNCC | 1 cut(s) | 262 |
| NsiI | ATGCAT | 2 cut(s) | 49, 320 |
| NspI | RCATGY | 2 cut(s) | 51, 225 |
| PctI | GAATGC | 1 cut(s) | 8 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PmaCI | CACGTG | 1 cut(s) | 130 |
| PmlI | CACGTG | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| Ppu21I | YACGTR | 1 cut(s) | 130 |
| PspCI | CACGTG | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 1 cut(s) | 262 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| SchI | GAGTC | 1 cut(s) | 308 |
| SetI | ASST | 3 cut(s) | 132, 139, 243 |
| Sse9I | AATT | 2 cut(s) | 20, 101 |
| SsiI | CCGC | 1 cut(s) | 6 |
| SspI | AATATT | 2 cut(s) | 210, 324 |
| StyI | CCWWGG | 1 cut(s) | 202 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 2 cut(s) | 20, 101 |
| TspDTI | ATGAA | 4 cut(s) | 272, 303, 316, 322 |
| XapI | RAATTY | 2 cut(s) | 20, 101 |
| XceI | RCATGY | 2 cut(s) | 51, 225 |
| Zsp2I | ATGCAT | 2 cut(s) | 49, 320 |