Rw2G008400

RNA polymerase I-specific transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018982
Physical Location & Seq
Reverse (-)
8331841 .. 8332635
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008400.1

Sequence Viewer

Length: 462 bp
ATGGATGATCCGCAGTTGAAGTCATTCCTTGCTGGTCTTCCTTTAGAATCTATTTTGAGCATTAAATTTAGCCCGCTGAAGGCATGTCTGCCTTCCATAGTGAAGGAGTTTCTAGGGCAAGTGAATGCAGCTGAATATTCATGGGCATGGGGTGGGAAGGAAGAGCTTCACAAGTTCTTCCCATTTGCCCCATCTCTGCTGATAAAAAGTGACAGATTCATCCGGCAGAATTTCATTTACTGGGACATGGTTCAACGTACTGATGAAGCAGACGAAGAAATTTCCAGCTATGAAGATGTTGGTGAAGCCTTTGTGCGTGAAAATGAGGAGAATGAAATGGATTGTGAGGTTTTGCACAGCTTGGAGGAACAACATTTTGGTGTTAATGAGGATTCCGTGCACCAACCTGTGCGAATGCCCTCGAGAATCAGACCGTCCATGAGTCCGGAGCCTGTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRN3

Protein Analysis

153

Amino Acids

17.68

Weight (kDa)

4.58

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018982)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0096821 RchiOBHm_Chr2g0096831
rosa_samantha Rh2AG108700 Rh2BG110700 Rh2CG112600 Rh2CG112700 Rh2DG112000
rosa_wichuraiana Rw2G008400 Rw2G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 2 cut(s) 11, 74
AclWI GGATC 1 cut(s) 2
AcsI RAATTY 3 cut(s) 65, 229, 279
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 19, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 4 cut(s) 131, 166, 288, 360
AluI AGCT 4 cut(s) 131, 166, 288, 360
Alw21I GWGCWC 1 cut(s) 402
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 421
Aor13HI TCCGGA 1 cut(s) 445
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 3 cut(s) 65, 229, 279
Asp700I GAANNNNTTC 2 cut(s) 23, 165
AsuHPI GGTGA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 199
BfaI CTAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 445
BseGI GGATG 2 cut(s) 10, 219
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 223, 446
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 2 cut(s) 130, 420
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 11, 74
BspEI TCCGGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 1 cut(s) 2
BspQI GCTCTTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 245
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 74
BstF5I GGATG 2 cut(s) 10, 219
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 10, 219
Cac8I GCNNGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 258
CviAII CATG 5 cut(s) 84, 141, 147, 247, 439
CviJI RGCY 7 cut(s) 72, 131, 166, 288, 308, 360, 451
CviKI_1 RGCY 7 cut(s) 72, 131, 166, 288, 308, 360, 451
CviQI GTAC 1 cut(s) 258
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 421
FaeI CATG 5 cut(s) 87, 144, 150, 250, 442
FaiI YATR 8 cut(s) 85, 98, 142, 148, 248, 291, 440, 457
FaqI GGGAC 1 cut(s) 257
FatI CATG 5 cut(s) 83, 140, 146, 246, 438
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 2 cut(s) 17, 206
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 129
HapII CCGG 2 cut(s) 223, 446
Hin1II CATG 5 cut(s) 87, 144, 150, 250, 442
HinfI GANTC 5 cut(s) 47, 216, 392, 426, 442
HpaII CCGG 2 cut(s) 223, 446
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 2 cut(s) 423, 446
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 4 cut(s) 73, 97, 102, 151
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 128, 355, 400
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 5 cut(s) 87, 144, 150, 250, 442
Kpn2I TCCGGA 1 cut(s) 445
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 5 cut(s) 18, 226, 236, 298, 420
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 5 cut(s) 29, 169, 173, 287, 305
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 3 cut(s) 65, 229, 279
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 5 cut(s) 319, 340, 358, 382, 430
MroI TCCGGA 1 cut(s) 445
MroXI GAANNNNTTC 2 cut(s) 23, 165
MseI TTAA 2 cut(s) 63, 384
MslI CAYNNNNRTG 2 cut(s) 145, 378
MspA1I CMGCKG 2 cut(s) 76, 131
MspI CCGG 2 cut(s) 223, 446
Mva1269I GAATGC 2 cut(s) 130, 420
NdeII GATC 1 cut(s) 7
NlaIII CATG 5 cut(s) 87, 144, 150, 250, 442
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 2 cut(s) 130, 420
PdmI GAANNNNTTC 2 cut(s) 23, 165
PfeI GAWTC 4 cut(s) 47, 216, 392, 426
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 450
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 2 cut(s) 145, 378
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 63, 384
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 451
SduI GDGCHC 1 cut(s) 402
SetI ASST 7 cut(s) 133, 168, 259, 290, 351, 362, 409
Sfr274I CTCGAG 1 cut(s) 421
SlaI CTCGAG 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 145, 378
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 3 cut(s) 65, 229, 279
SsiI CCGC 2 cut(s) 11, 74
SspI AATATT 1 cut(s) 137
SspMI CTAG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 422
TasI AATT 3 cut(s) 65, 229, 279
TfiI GAWTC 4 cut(s) 47, 216, 392, 426
Tru1I TTAA 2 cut(s) 63, 384
Tru9I TTAA 2 cut(s) 63, 384
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 6 cut(s) 129, 208, 223, 279, 306, 348
TspGWI ACGGA 1 cut(s) 385
VneI GTGCAC 1 cut(s) 398
XapI RAATTY 3 cut(s) 65, 229, 279
XceI RCATGY 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 23, 165
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.