RchiOBHm_Chr2g0104041

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
15428000 .. 15430527
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47832

Sequence Viewer

Length: 1806 bp
ATGAGGCCAACCTCTTTCCTGCTTTTTTTTCTTGGAACATTCGTTGGCTTGAGTGCTTTCTGCATCATCAATGCAGAAGACCCTTACAGATATTTTACATGGACAGTTACATACGGATCAGTTTCTCCATTGGGTGTTCCTCGACAGGCTATCCTTATTAATGGTCAATTTCCTGGTCCAACAATTGAGGCTGTGACTAATGACAACATAATCGTTGATGTCATTAATAAGTTGGATGAACCTTTCCTCATTACATGGTCAGTACTTTTGTTGGAAGTTTTGATAGTTGGAGACTCAGAAGCTTTGTGTTCGCTACTCATAGGCTTTTCTTTCTTATCTTGGTGTGAAATCAGGAATGGAATTAAACAGAGGAAGTCCACATGGGAAGATGGAGTTCTCGGAACCAATTGCCCGATTCCTCCAAACACAAGCTGGAGATACAAGTTTCAAACAAAAGATCAGATTGGAACCTTCAGTTACTTTCCTTCAACGAAACTTCATAGAGCTGCTGGTGGTTTTGGTGGTTTCAATGTGGCACACAGGTCTGTGATAGCTGTCCCATATCCCATACCCGCTGAAGAGTTTACCGTGCTTGTTGGTGATTGGTACAACACTAACCACAAGGTATTGCAACAAAACTTGGACTCTGGCAATCCTCTTCCTCTTCCTGATGGTCTTCTTATAAATGGGCTTCATAGGTCTGCAATCTTCACTGGTCAAGAAGGTAACATCAGGCATAACCCCCTCCATAATTTCTTTGGGTATCATAATTACCGGTTTCTGAAAATTTTGTACTCATACTTTCGGTGCGTTCTTTCAGGAAAGACCTACAAATTCAGGATATCAAATGTGGGAATAGCAACTTCAATCAACTTTAGGATTCAGGGTCATACAATGACGCTTGTTGAAGTTGAAGGAGCTAATACCTTGCAAGAGGTGTATGATTCACTTGACGTTCATCCAGGCCAATCTGTAGCTGTTTTGGTCACCTTACACGGTTCAGTTAAGGACTATTTCATTGTGGCCTCTACCCGATTCACAAAGCCCATTCTCACAACCACTGGAATTCTTCGATATGCTGGTTCTAGCATCAAGGCTGCAGGGCCATTGCCTATTGGTCCAACCTATCACATTCACTGGTCTATGAAGCAAGCCAGGACAATCAGATTGAATTTGACAGCAAATGCAGCCAGGCCTAACCCTCAGGGCTCATTCCATTATGGTACCATTAAAGTAGTGAGGACACTTGTTTTAGCCAATTCTGCTACTAAGATCGGTGGCAAGCTTCGCTATGCTGTAAACAAGATATCCTATGTTGATCCAGAGACCCCCTTGAAGCTGGCTGACTGGTTTAACATCCCTGGAGTATTTAACTTCAACACAATCAAGGACACACCTACTCCAGGCCCTGCAAGTTTTGGTGCCTCGGTCATAGGAACCACACTCCATGACTTCGTCGAAATCGTATTCCAGAACACCGAACCCACACTTCAATCTTGGCATCTTGATGGATATAGCTTCTACATTGTTGGATATGGTTCTAAAAATTGGACCCCAGATATGAGGAGACGCTACAATTTGGCAGACGCTGTACCAAGACACACAGTTCAGGTATATCCATTTGGTTGGAGTGCTGTGATGGTGTCTTTGGACAACAAGGGTATGTGGAACTTGAGGTCTGCAATCTGGTCAAGAAGGTACTTGGGTCAGCAATTGTATATCAGAGTTTGGAACGATGAGCAAAGCTTCTTCACTGAGAATGATATCCCTCAAAATGCATTATTTTGTGGCAAGGCCCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

67.44

Weight (kDa)

9.18

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 87 1.4e-13 Multicopper oxidase
Cu-oxidase_3 PF07732 119 - 181 2e-17 Multicopper oxidase
Cu-oxidase PF00394 193 - 361 3.7e-36 Multicopper oxidase
Cu-oxidase_2 PF07731 443 - 581 1.5e-31 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010983)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
Acc65I GGTACC 1 cut(s) 1223
AccB1I GGYRCC 2 cut(s) 1223, 1421
AciI CCGC 1 cut(s) 573
AclWI GGATC 2 cut(s) 124, 1313
AcsI RAATTY 4 cut(s) 786, 833, 1065, 1171
AcuI CTGAAG 2 cut(s) 457, 597
AfaI GTAC 6 cut(s) 264, 608, 794, 1225, 1593, 1700
AfiI CCNNNNNNNGG 1 cut(s) 1403
AgeI ACCGGT 1 cut(s) 774
AjnI CCWGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
Alw26I GTCTC 3 cut(s) 285, 1319, 1561
AlwI GGATC 2 cut(s) 124, 1313
AlwNI CAGNNNCTG 2 cut(s) 1409, 1589
AoxI GGCC 7 cut(s) 5, 964, 1023, 1103, 1193, 1405, 1794
ApeKI GCWGC 3 cut(s) 506, 1097, 1187
ApoI RAATTY 4 cut(s) 786, 833, 1065, 1171
AseI ATTAAT 2 cut(s) 159, 225
AsiGI ACCGGT 1 cut(s) 774
Asp718I GGTACC 1 cut(s) 1223
AspS9I GGNCC 6 cut(s) 176, 1103, 1118, 1406, 1551, 1795
AsuHPI GGTGA 2 cut(s) 611, 979
AvaII GGWCC 3 cut(s) 176, 1118, 1551
AxyI CCTNAGG 1 cut(s) 1203
BaeI ACNNNNGTAYC 2 cut(s) 1690, 1723
BanI GGYRCC 2 cut(s) 1223, 1421
BanII GRGCYC 1 cut(s) 1211
BbsI GAAGAC 2 cut(s) 84, 668
BbvI GCAGC 3 cut(s) 493, 1084, 1199
BccI CCATC 4 cut(s) 383, 665, 1502, 1633
BciT130I CCWGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
BcoDI GTCTC 3 cut(s) 285, 1319, 1561
BfaI CTAG 1 cut(s) 1086
BfmI CTRYAG 2 cut(s) 972, 1098
BisI GCNGC 3 cut(s) 507, 1098, 1188
BlsI GCNGC 3 cut(s) 508, 1099, 1189
BmcAI AGTACT 1 cut(s) 264
Bme1390I CCNGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
Bme18I GGWCC 3 cut(s) 176, 1118, 1551
BmgT120I GGNCC 6 cut(s) 176, 1103, 1118, 1406, 1551, 1795
BmiI GGNNCC 6 cut(s) 403, 469, 1225, 1423, 1438, 1553
BmrFI CCNGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
BmsI GCATC 3 cut(s) 72, 1098, 1510
BpiI GAAGAC 2 cut(s) 84, 668
BpmI CTGGAG 3 cut(s) 454, 1383, 1386
BpuEI CTTGAG 2 cut(s) 70, 1693
BsaI GGTCTC 1 cut(s) 1319
BsaJI CCNNGG 2 cut(s) 1360, 1425
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 2 cut(s) 1384, 1414
Bsc4I CCNNNNNNNGG 1 cut(s) 1403
Bse118I RCCGGY 1 cut(s) 774
Bse1I ACTGG 4 cut(s) 718, 1066, 1142, 1352
Bse21I CCTNAGG 1 cut(s) 1203
Bse3DI GCAATG 1 cut(s) 1106
BseBI CCWGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
BseDI CCNNGG 2 cut(s) 1360, 1425
BseGI GGATG 3 cut(s) 241, 958, 1356
BseLI CCNNNNNNNGG 1 cut(s) 1403
BseMI GCAATG 1 cut(s) 1106
BseMII CTCAG 3 cut(s) 309, 1217, 1746
BseNI ACTGG 4 cut(s) 718, 1066, 1142, 1352
BseRI GAGGAG 1 cut(s) 1579
BseXI GCAGC 3 cut(s) 493, 1084, 1199
BshFI GGCC 7 cut(s) 7, 966, 1025, 1105, 1195, 1407, 1796
BshNI GGYRCC 2 cut(s) 1223, 1421
BshTI ACCGGT 1 cut(s) 774
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 1403
BsmAI GTCTC 3 cut(s) 285, 1319, 1561
BsmBI CGTCTC 1 cut(s) 1561
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 7 cut(s) 7, 966, 1025, 1105, 1195, 1407, 1796
Bso31I GGTCTC 1 cut(s) 1319
Bsp1286I GDGCHC 1 cut(s) 1211
Bsp143I GATC 4 cut(s) 116, 457, 1272, 1318
BspACI CCGC 1 cut(s) 573
BspANI GGCC 7 cut(s) 7, 966, 1025, 1105, 1195, 1407, 1796
BspCNI CTCAG 3 cut(s) 308, 1216, 1747
BspLI GGNNCC 6 cut(s) 403, 469, 1225, 1423, 1438, 1553
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 2 cut(s) 124, 1313
BspT107I GGYRCC 2 cut(s) 1223, 1421
BspTNI GGTCTC 1 cut(s) 1319
BsrDI GCAATG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 774
BsrI ACTGG 4 cut(s) 718, 1066, 1142, 1352
BssAI RCCGGY 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 1360, 1425
BssMI GATC 4 cut(s) 116, 457, 1272, 1318
Bst2UI CCWGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
Bst4CI ACNGT 4 cut(s) 106, 589, 998, 1606
Bst6I CTCTTC 3 cut(s) 573, 663, 669
BstC8I GCNNGC 3 cut(s) 1152, 1283, 1341
BstDEI CTNAG 4 cut(s) 295, 1203, 1269, 1755
BstEII GGTNACC 1 cut(s) 985
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 3 cut(s) 241, 958, 1356
BstKTI GATC 4 cut(s) 119, 460, 1275, 1321
BstMAI GTCTC 3 cut(s) 285, 1319, 1561
BstMBI GATC 4 cut(s) 116, 457, 1272, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 1187, 1262, 1287
BstNI CCWGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
BstPI GGTNACC 1 cut(s) 985
BstSCI CCNGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
BstSFI CTRYAG 2 cut(s) 972, 1098
BstV1I GCAGC 3 cut(s) 493, 1084, 1199
BstV2I GAAGAC 2 cut(s) 84, 668
BstXI CCANNNNNNTGG 1 cut(s) 1626
Bsu36I CCTNAGG 1 cut(s) 1203
BsuRI GGCC 7 cut(s) 7, 966, 1025, 1105, 1195, 1407, 1796
BtsCI GGATG 3 cut(s) 241, 958, 1356
BtsIMutI CAGTG 5 cut(s) 711, 1059, 1135, 1752, 1801
Cac8I GCNNGC 3 cut(s) 1152, 1283, 1341
CaiI CAGNNNCTG 2 cut(s) 1409, 1589
Cfr10I RCCGGY 1 cut(s) 774
Cfr13I GGNCC 6 cut(s) 176, 1103, 1118, 1406, 1551, 1795
CseI GACGC 3 cut(s) 907, 1578, 1595
Csp6I GTAC 6 cut(s) 263, 607, 793, 1224, 1592, 1699
CspAI ACCGGT 1 cut(s) 774
CviAII CATG 4 cut(s) 99, 255, 381, 1448
CviQI GTAC 6 cut(s) 263, 607, 793, 1224, 1592, 1699
DdeI CTNAG 4 cut(s) 295, 1203, 1269, 1755
DpnI GATC 4 cut(s) 118, 459, 1274, 1320
DpnII GATC 4 cut(s) 116, 457, 1272, 1318
Eam1104I CTCTTC 3 cut(s) 573, 663, 669
EarI CTCTTC 3 cut(s) 573, 663, 669
Eco147I AGGCCT 1 cut(s) 1195
Eco24I GRGCYC 1 cut(s) 1211
Eco31I GGTCTC 1 cut(s) 1319
Eco32I GATATC 3 cut(s) 843, 1308, 1765
Eco47I GGWCC 3 cut(s) 176, 1118, 1551
Eco57I CTGAAG 2 cut(s) 457, 597
Eco81I CCTNAGG 1 cut(s) 1203
Eco91I GGTNACC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 1 cut(s) 1406
EcoO65I GGTNACC 1 cut(s) 985
EcoRI GAATTC 1 cut(s) 1065
EcoRII CCWGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
EcoRV GATATC 3 cut(s) 843, 1308, 1765
EcoT22I ATGCAT 1 cut(s) 1780
EcoT38I GRGCYC 1 cut(s) 1211
Esp3I CGTCTC 1 cut(s) 1561
FaeI CATG 4 cut(s) 102, 258, 384, 1451
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 98, 254, 380, 1447
FauI CCCGC 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 507, 1098, 1188
FokI GGATG 3 cut(s) 248, 945, 1343
FriOI GRGCYC 1 cut(s) 1211
Fsp4HI GCNGC 3 cut(s) 507, 1098, 1188
FspBI CTAG 1 cut(s) 1086
GluI GCNGC 3 cut(s) 507, 1098, 1188
GsuI CTGGAG 3 cut(s) 454, 1383, 1386
HaeIII GGCC 7 cut(s) 7, 966, 1025, 1105, 1195, 1407, 1796
HapII CCGG 1 cut(s) 775
HgaI GACGC 3 cut(s) 907, 1578, 1595
Hin1II CATG 4 cut(s) 102, 258, 384, 1451
HindIII AAGCTT 3 cut(s) 300, 1283, 1744
HinfI GANTC 6 cut(s) 293, 415, 644, 880, 944, 1035
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 611, 979
Hpy166II GTNNAC 3 cut(s) 378, 585, 1300
Hpy188I TCNGA 6 cut(s) 298, 401, 462, 783, 1166, 1724
Hpy188III TCNNGA 9 cut(s) 352, 668, 719, 819, 838, 1322, 1471, 1505, 1692
Hpy8I GTNNAC 3 cut(s) 378, 585, 1300
Hpy99I CGWCG 1 cut(s) 1460
HpyAV CCTTC 5 cut(s) 481, 495, 716, 908, 1689
HpyCH4III ACNGT 4 cut(s) 106, 589, 998, 1606
HpyCH4IV ACGT 1 cut(s) 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 1187, 1262, 1287
HpyF3I CTNAG 4 cut(s) 295, 1203, 1269, 1755
HpySE526I ACGT 1 cut(s) 954
Hsp92II CATG 4 cut(s) 102, 258, 384, 1451
KpnI GGTACC 1 cut(s) 1227
Kzo9I GATC 4 cut(s) 116, 457, 1272, 1318
LmnI GCTCC 1 cut(s) 917
Lsp1109I GCAGC 3 cut(s) 493, 1084, 1199
LweI GCATC 3 cut(s) 72, 1098, 1510
MaeI CTAG 1 cut(s) 1086
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 5 cut(s) 106, 193, 476, 725, 985
MalI GATC 4 cut(s) 118, 459, 1274, 1320
MboI GATC 4 cut(s) 116, 457, 1272, 1318
MboII GAAGA 9 cut(s) 89, 398, 590, 650, 656, 668, 700, 1061, 1741
MfeI CAATTG 3 cut(s) 183, 406, 1712
MhlI GDGCHC 1 cut(s) 1211
MlyI GAGTC 2 cut(s) 287, 638
MmeI TCCRAC 7 cut(s) 203, 213, 252, 268, 1145, 1510, 1607
Mph1103I ATGCAT 1 cut(s) 1780
MseI TTAA 7 cut(s) 159, 225, 363, 1005, 1230, 1353, 1371
MslI CAYNNNNRTG 1 cut(s) 1506
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
MunI CAATTG 3 cut(s) 183, 406, 1712
MvaI CCWGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
MwoI GCNNNNNNNGC 3 cut(s) 1187, 1262, 1287
NdeII GATC 4 cut(s) 116, 457, 1272, 1318
NlaIII CATG 4 cut(s) 102, 258, 384, 1451
NlaIV GGNNCC 6 cut(s) 403, 469, 1225, 1423, 1438, 1553
NmuCI GTSAC 2 cut(s) 193, 985
NsiI ATGCAT 1 cut(s) 1780
PceI AGGCCT 1 cut(s) 1195
PcsI WCGNNNNNNNCGW 1 cut(s) 1461
PfeI GAWTC 4 cut(s) 415, 880, 944, 1035
PflFI GACNNNGTC 1 cut(s) 1454
PinAI ACCGGT 1 cut(s) 774
PkrI GCNGC 3 cut(s) 508, 1099, 1189
PleI GAGTC 2 cut(s) 287, 638
PpsI GAGTC 2 cut(s) 287, 638
PshBI ATTAAT 2 cut(s) 159, 225
PsiI TTATAA 1 cut(s) 683
Psp6I CCWGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
PspEI GGTNACC 1 cut(s) 985
PspGI CCWGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
PspN4I GGNNCC 6 cut(s) 403, 469, 1225, 1423, 1438, 1553
PspPI GGNCC 6 cut(s) 176, 1103, 1118, 1406, 1551, 1795
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 2 cut(s) 1409, 1589
PsyI GACNNNGTC 1 cut(s) 1454
RsaI GTAC 6 cut(s) 264, 608, 794, 1225, 1593, 1700
RsaNI GTAC 6 cut(s) 263, 607, 793, 1224, 1592, 1699
RseI CAYNNNNRTG 1 cut(s) 1506
SaqAI TTAA 7 cut(s) 159, 225, 363, 1005, 1230, 1353, 1371
SatI GCNGC 3 cut(s) 507, 1098, 1188
Sau3AI GATC 4 cut(s) 116, 457, 1272, 1318
Sau96I GGNCC 6 cut(s) 176, 1103, 1118, 1406, 1551, 1795
ScaI AGTACT 1 cut(s) 264
SchI GAGTC 2 cut(s) 287, 638
ScrFI CCNGG 6 cut(s) 174, 963, 1156, 1192, 1362, 1404
SduI GDGCHC 1 cut(s) 1211
SfaNI GCATC 3 cut(s) 72, 1098, 1510
SfcI CTRYAG 2 cut(s) 972, 1098
SinI GGWCC 3 cut(s) 176, 1118, 1551
SmiMI CAYNNNNRTG 1 cut(s) 1506
SmlI CTYRAG 2 cut(s) 49, 1672
SmoI CTYRAG 2 cut(s) 49, 1672
SseBI AGGCCT 1 cut(s) 1195
SsiI CCGC 1 cut(s) 573
SspMI CTAG 1 cut(s) 1086
StuI AGGCCT 1 cut(s) 1195
StyD4I CCNGG 6 cut(s) 172, 961, 1154, 1190, 1360, 1402
TaaI ACNGT 4 cut(s) 106, 589, 998, 1606
TaiI ACGT 1 cut(s) 957
TaqI TCGA 3 cut(s) 142, 1072, 1458
TaqII GACCGA 1 cut(s) 1417
TatI WGTACW 2 cut(s) 262, 792
TfiI GAWTC 4 cut(s) 415, 880, 944, 1035
Tru1I TTAA 7 cut(s) 159, 225, 363, 1005, 1230, 1353, 1371
Tru9I TTAA 7 cut(s) 159, 225, 363, 1005, 1230, 1353, 1371
TscAI CASTG 4 cut(s) 718, 1066, 1142, 1759
TseFI GTSAC 2 cut(s) 193, 985
TseI GCWGC 3 cut(s) 506, 1097, 1187
Tsp45I GTSAC 2 cut(s) 193, 985
TspDTI ATGAA 6 cut(s) 252, 488, 683, 947, 1006, 1160
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 4 cut(s) 718, 1066, 1142, 1759
Tth111I GACNNNGTC 1 cut(s) 1454
VpaK11BI GGWCC 3 cut(s) 176, 1118, 1551
VspI ATTAAT 2 cut(s) 159, 225
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 4 cut(s) 786, 833, 1065, 1171
XcmI CCANNNNNNNNNTGG 2 cut(s) 429, 755
XspI CTAG 1 cut(s) 1086
ZrmI AGTACT 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 1780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.