Rh2BG175100

L-ascorbate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010983
Physical Location & Seq
Reverse (-)
15514035 .. 15516861
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG175100.1

Sequence Viewer

Length: 1023 bp
ATGAAGTGCGCCGCAAATGAGCTTCGATTCTTCCTCGGTCCTCGAGTCCACGCTGGCCCTGGCTGCACCCGCGACCATTTATATAACCTCACCTGGTGTTCGATCATTTCTCACGCTCAACTACAGAGCTTGGGGGAATATATAGGAGCTTATACAATGAGGCCAACCTCTTTCCTGCTTTTTTTTCTTGGAACATTGGTTGGCTTGAGTGCTTTCTGCAACATCAATGCAGAAGACCCTTATAGATATTTTACATGGACAGTTACATACGGATCAGTTTCTCCATTGGGTGTTCCTCGACAGGTATTGCAACAAAAATTGGACTCTGGCAATCCTCTTCCTCTTCCTGATGGTCTTCTTATAAATGGGCTTCATAGGTCTGCAATCTTCACTGGTCAAGAAGGAAAGACCTACAAATTCAGGATATCAAATGTGGGAATAGCAACTTCAATCAACTTTAGGATTCAGGGTCATACAATGACGCTTGTTGAAGTTGAAGGAGCTAATACCTTGCAAGAGGTGTATGATTCACTTGACGTTCATCCAGGCCAATCTGTAGCTGTTTTGGTCACCTTACACGGTTCAGTCAAGGACTATTTCATTGTGGCCTCTACCCGATTCACAAAGCCCATTCTCACAACCACTGGAATTCTTCGATATGCTGGTTCTAGCATCAAGGCTGCAGGGCCATTGCCTATTGGTCCAACCTATCACATTCACTGGTCTATGAAGCAAGCCAGGACAATCAGATATGGTTCTAAAAATTGGACCCCAGATATGAGGAGACGCTACAATTTGGCAGACGCTGTACCAAGACACACAGTTCAGGTATATCCATTTGGTTGGAGTGCTGTGATGGTGTCTTTGGACAACAAGGGTATGTGGAACTTGAGGTCTGCAATCTGGTCAAGAAGGTACTTGGGTCAGCAATTGTATATCAGAGTTTGGAACGATGAGAAAAGCTTCTTCACTGAGAATGATATCCCTCAAAATGCATTATTTTGTGGCAAGGCCCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

340

Amino Acids

38.24

Weight (kDa)

9.53

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 104 - 222 7e-33 Multicopper oxidase
Cu-oxidase_2 PF07731 238 - 320 2.8e-16 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23630 AT2G23630 AT4G37160 AT4G37160
fragaria_vesca FvH4_1g14980 FvH4_1g14980
malus_domestica MD02G1163600.v1.1
prunus_persica Prupe.7G140600_v2.0.a1 Prupe.7G140600_v2.0.a1
pyrus_communis pycom02g13000
rosa_chinensis RchiOBHm_Chr2g0104041
rosa_laevigata RLG00000017280
rosa_multiflora Rmu_sc0000193.1_g000006
rosa_roxburghii Rroxscaffold_2G00139180
rosa_rugosa Rorug02G0119000
rosa_samantha Rh2AG168100 Rh2BG175100 Rh2CG174000 Rh2DG173600
rosa_wichuraiana Rw2G013150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 12, 70
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 2 cut(s) 416, 648
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 2 cut(s) 810, 917
AgsI TTSAA 3 cut(s) 450, 491, 497
AjnI CCWGG 4 cut(s) 58, 92, 544, 737
AluBI AGCT 6 cut(s) 22, 129, 149, 503, 560, 963
AluI AGCT 6 cut(s) 22, 129, 149, 503, 560, 963
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 6 cut(s) 55, 161, 547, 606, 686, 1011
ApeKI GCWGC 2 cut(s) 63, 680
ApoI RAATTY 2 cut(s) 416, 648
Asp700I GAANNNNTTC 1 cut(s) 962
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 6 cut(s) 38, 56, 686, 701, 768, 1012
AsuHPI GGTGA 2 cut(s) 82, 562
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 3 cut(s) 38, 701, 768
BaeI ACNNNNGTAYC 2 cut(s) 907, 940
BbsI GAAGAC 2 cut(s) 240, 347
BbvI GCAGC 2 cut(s) 50, 667
BccI CCATC 2 cut(s) 344, 850
BciT130I CCWGG 4 cut(s) 60, 94, 546, 739
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 3 cut(s) 122, 555, 681
BisI GCNGC 3 cut(s) 12, 64, 681
BlsI GCNGC 3 cut(s) 13, 65, 682
Bme1390I CCNGG 4 cut(s) 60, 94, 546, 739
Bme18I GGWCC 3 cut(s) 38, 701, 768
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 6 cut(s) 38, 56, 686, 701, 768, 1012
BmiI GGNNCC 1 cut(s) 770
BmrFI CCNGG 4 cut(s) 60, 94, 546, 739
BmsI GCATC 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 240, 347
BpuEI CTTGAG 2 cut(s) 226, 910
BsaJI CCNNGG 2 cut(s) 34, 58
Bse1I ACTGG 3 cut(s) 397, 649, 725
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 4 cut(s) 60, 94, 546, 739
BseDI CCNNGG 2 cut(s) 34, 58
BseGI GGATG 1 cut(s) 541
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 3 cut(s) 397, 649, 725
BseRI GAGGAG 1 cut(s) 796
BseXI GCAGC 2 cut(s) 50, 667
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 6 cut(s) 57, 163, 549, 608, 688, 1013
BsiHKCI CYCGRG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 778
BsmBI CGTCTC 1 cut(s) 778
BsnI GGCC 6 cut(s) 57, 163, 549, 608, 688, 1013
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 2 cut(s) 102, 272
BspACI CCGC 2 cut(s) 12, 70
BspANI GGCC 6 cut(s) 57, 163, 549, 608, 688, 1013
BspCNI CTCAG 1 cut(s) 964
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 770
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 689
BsrI ACTGG 3 cut(s) 397, 649, 725
BssECI CCNNGG 2 cut(s) 34, 58
BssMI GATC 2 cut(s) 102, 272
Bst2UI CCWGG 4 cut(s) 60, 94, 546, 739
Bst4CI ACNGT 3 cut(s) 262, 581, 823
Bst6I CTCTTC 2 cut(s) 342, 348
BstC8I GCNNGC 2 cut(s) 55, 735
BstDEI CTNAG 1 cut(s) 972
BstEII GGTNACC 1 cut(s) 568
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 105, 275
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 2 cut(s) 102, 272
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstNI CCWGG 4 cut(s) 60, 94, 546, 739
BstPI GGTNACC 1 cut(s) 568
BstSCI CCNGG 4 cut(s) 58, 92, 544, 737
BstSFI CTRYAG 3 cut(s) 122, 555, 681
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 50, 667
BstV2I GAAGAC 2 cut(s) 240, 347
BstXI CCANNNNNNTGG 1 cut(s) 843
BsuRI GGCC 6 cut(s) 57, 163, 549, 608, 688, 1013
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 5 cut(s) 390, 642, 718, 969, 1018
Cac8I GCNNGC 2 cut(s) 55, 735
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 6 cut(s) 38, 56, 686, 701, 768, 1012
CseI GACGC 3 cut(s) 490, 795, 812
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 809, 916
CviAII CATG 1 cut(s) 255
CviQI GTAC 2 cut(s) 809, 916
DdeI CTNAG 1 cut(s) 972
DpnI GATC 2 cut(s) 104, 274
DpnII GATC 2 cut(s) 102, 272
DraIII CACNNNGTG 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 342, 348
EarI CTCTTC 2 cut(s) 342, 348
Eco32I GATATC 2 cut(s) 426, 982
Eco47I GGWCC 3 cut(s) 38, 701, 768
Eco88I CYCGRG 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 4 cut(s) 58, 92, 544, 737
EcoRV GATATC 2 cut(s) 426, 982
EcoT22I ATGCAT 1 cut(s) 997
Esp3I CGTCTC 1 cut(s) 778
FaeI CATG 1 cut(s) 258
FatI CATG 1 cut(s) 254
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 12, 64, 681
FokI GGATG 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 12, 64, 681
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 12, 64, 681
HaeIII GGCC 6 cut(s) 57, 163, 549, 608, 688, 1013
HgaI GACGC 3 cut(s) 490, 795, 812
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 6 cut(s) 27, 45, 323, 463, 527, 618
HphI GGTGA 2 cut(s) 82, 562
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 749, 941
Hpy188III TCNNGA 4 cut(s) 347, 398, 421, 909
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 395, 491, 906
HpyCH4III ACNGT 3 cut(s) 262, 581, 823
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 9 cut(s) 66, 219, 230, 310, 383, 514, 683, 899, 995
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
HpyF3I CTNAG 1 cut(s) 972
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 102, 272
LmnI GCTCC 2 cut(s) 146, 500
Lsp1109I GCAGC 2 cut(s) 50, 667
LweI GCATC 1 cut(s) 681
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 262, 568
MalI GATC 2 cut(s) 104, 274
MboI GATC 2 cut(s) 102, 272
MboII GAAGA 8 cut(s) 22, 245, 329, 335, 347, 379, 644, 958
MfeI CAATTG 1 cut(s) 929
MluCI AATT 6 cut(s) 317, 416, 648, 763, 793, 929
MlyI GAGTC 2 cut(s) 54, 317
MmeI TCCRAC 2 cut(s) 728, 824
Mph1103I ATGCAT 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 962
MspR9I CCNGG 4 cut(s) 60, 94, 546, 739
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 4 cut(s) 60, 94, 546, 739
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NdeII GATC 2 cut(s) 102, 272
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 770
NmuCI GTSAC 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 997
PaeR7I CTCGAG 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 4 cut(s) 27, 463, 527, 618
PkrI GCNGC 3 cut(s) 13, 65, 682
PleI GAGTC 2 cut(s) 53, 317
PpsI GAGTC 2 cut(s) 53, 317
PsiI TTATAA 1 cut(s) 362
Psp6I CCWGG 4 cut(s) 58, 92, 544, 737
PspEI GGTNACC 1 cut(s) 568
PspGI CCWGG 4 cut(s) 58, 92, 544, 737
PspN4I GGNNCC 1 cut(s) 770
PspPI GGNCC 6 cut(s) 38, 56, 686, 701, 768, 1012
PspXI VCTCGAGB 1 cut(s) 42
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 810, 917
RsaNI GTAC 2 cut(s) 809, 916
SatI GCNGC 3 cut(s) 12, 64, 681
Sau3AI GATC 2 cut(s) 102, 272
Sau96I GGNCC 6 cut(s) 38, 56, 686, 701, 768, 1012
SchI GAGTC 2 cut(s) 54, 317
ScrFI CCNGG 4 cut(s) 60, 94, 546, 739
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 681
SfcI CTRYAG 3 cut(s) 122, 555, 681
Sfr274I CTCGAG 1 cut(s) 42
SinI GGWCC 3 cut(s) 38, 701, 768
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 3 cut(s) 42, 205, 889
SmoI CTYRAG 3 cut(s) 42, 205, 889
Sse9I AATT 6 cut(s) 317, 416, 648, 763, 793, 929
SsiI CCGC 2 cut(s) 12, 70
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 4 cut(s) 58, 92, 544, 737
TaaI ACNGT 3 cut(s) 262, 581, 823
TaiI ACGT 1 cut(s) 540
TaqI TCGA 5 cut(s) 25, 43, 101, 298, 655
TaqII GACCGA 1 cut(s) 26
TasI AATT 6 cut(s) 317, 416, 648, 763, 793, 929
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 4 cut(s) 27, 463, 527, 618
TscAI CASTG 4 cut(s) 397, 649, 725, 976
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 2 cut(s) 63, 680
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 5 cut(s) 17, 362, 530, 589, 743
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 4 cut(s) 397, 649, 725, 976
VpaK11BI GGWCC 3 cut(s) 38, 701, 768
XapI RAATTY 2 cut(s) 416, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.