RLG00000017280

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
14913225 .. 14916071
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017280

Sequence Viewer

Length: 1698 bp
ATGAAGTGCGCCGCAAATGAGCTTCGATTCTTCCTCGGTCCTCGCGTCCACGCTGGCCCTGGCTGCACCCGCGACCATTTATATAACCTCACCTGGTGTTCGATCACTCCTCACACTCAACTACAAAATCTGAAACTTGGGGGAATATATAGGAGCTTATACAATGAGGCCAACCTCTTTCCTGCGTTTTTTTCTTGGAACATTGCTTCTCCATTGGGTGTTCCTCGACAGGCTATCCTTATTAATGGTCAATTTCCTGGTCCAACAATTGAGGCTGTGACTAATGACAACATAATCGTTGACGTCATTAATAAGTTGGATGAACCTTTCCTCATTACATGGAATGGAATTAAACAGCGGAAGTCCTCATGGCAAGATGGAGTTCTCGGAACCAATTGCCCAATTCCTCCAAACACAAGCTGGAGATACAAGTTTCAAACAAAGGATCAGATTGGAACCTTCAGTTACTTCCCTTCAACGGAACTTCATAGAGCTGCTGGTGGTTTTGGGGGTTTCAATGTGGCACACAGGTCTGTGATAGCTGTCCCATATCCTATACCCGCTGAAGAGTTTACCATGCTTGTTGGTGATTGGTACAACACTAACCACAAGGTATTGCAACAAAAATTGGACTCTGGCAATCCTCTTCCTCTTCCTGATGGTCTTCTTATAAATGGGCTTCATAGGTCTGCAATCTTCACTGGTCAAGAAGGAAAGACCTACAAATTCAGGATATCAAATGTGGGAATAGCAACTTCAATCAACTTTAGGATTCAGGGTCATGTAATGACGCTTGTTGAAGTTGAAGGAGCTAATACCTTGCAAGAAGTGTATGAATCACTTGACGTTCATCCAGGCCAATCTGTAGCTGTTTTGGTTACCTTACACGGTTCAGTCAAGGACTATTTCATTGTGGCCTCTACCCGATTCACAAAGCCCATTCTCACAACTACTGGAATTCTTCGATATGCTGGTTCTAGCATCAAGGCTGCAGGGCCATTGCCTGTTGGTCCAACCTATCACATTCACTGGTCTATGAAGCAAGCCAGGACAATCAGATTGAATTTGACAGCAAATGCAGCCAGGCCTAACCCTCAGGGCTCATTCCATTATGGTACCATTAAAGTAGTGAGGACACTTGTTTTAGCCAATTCTGCTACTAAGATCGGTGGCAAGCTTCGCTATGCTGTAAACAAGATATCATATGTTGATCCAGAGACCCCCTTGAAGCTGGCTGACTGGTTTAACATCCCTGGAGTATTTAACTTCAACACAATCAAGGACACACCTACTCCAGGCCCTGCAAGTTTTGGTGCCTCGGTCATAGGAACCACACTCCATGACTTCGTTGAAATCGTATTCCAGAACACCGAACCCACACTTCAATCTTGGCATCTTGATGGATATAGCTTCTACATTGTTGGATATGGTTCTAAAAATTGGACTCCAGATATGAGGAGACGCTACAATTTGGCAGACGCTGTACCAAGACACACAGTTCAGGTATATCCATTTGGTTGGAGTGCTGTGATGGTGTCTTTGGACAACAAGGGTATGTGGAACTTGAGGTCTGCAATCTGGTCAAGAAGGTACTTGGGTCAGCAATTGTATATCAGAGTTTGGAACGATGAGAAAAGCCTCCTCACTGAGAATGATATCCCTCAAAATGCATTATTTTGTGGCAAGGCCCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

63.08

Weight (kDa)

9.4

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 68 - 177 5.2e-39 Multicopper oxidase
Cu-oxidase PF00394 189 - 325 4.3e-38 Multicopper oxidase
Cu-oxidase_2 PF07731 407 - 545 1.6e-31 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010983)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AatII GACGTC 1 cut(s) 306
Acc65I GGTACC 1 cut(s) 1115
AccB1I GGYRCC 2 cut(s) 1115, 1313
AccII CGCG 2 cut(s) 45, 72
AciI CCGC 4 cut(s) 12, 70, 358, 561
AclWI GGATC 2 cut(s) 453, 1205
AcsI RAATTY 3 cut(s) 725, 957, 1063
AcuI CTGAAG 2 cut(s) 445, 585
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 4 cut(s) 596, 1117, 1485, 1592
AfiI CCNNNNNNNGG 2 cut(s) 478, 1295
AjnI CCWGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
Alw26I GTCTC 2 cut(s) 1211, 1453
AlwI GGATC 2 cut(s) 453, 1205
AlwNI CAGNNNCTG 2 cut(s) 1301, 1481
AoxI GGCC 8 cut(s) 55, 168, 856, 915, 995, 1085, 1297, 1686
ApeKI GCWGC 4 cut(s) 63, 494, 989, 1079
ApoI RAATTY 3 cut(s) 725, 957, 1063
AseI ATTAAT 2 cut(s) 243, 309
Asp718I GGTACC 1 cut(s) 1115
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 7 cut(s) 38, 56, 260, 995, 1010, 1298, 1687
AsuHPI GGTGA 2 cut(s) 82, 599
AvaII GGWCC 3 cut(s) 38, 260, 1010
AxyI CCTNAGG 1 cut(s) 1095
BaeI ACNNNNGTAYC 2 cut(s) 1582, 1615
BanI GGYRCC 2 cut(s) 1115, 1313
BanII GRGCYC 1 cut(s) 1103
BbsI GAAGAC 1 cut(s) 656
BbvI GCAGC 4 cut(s) 50, 481, 976, 1091
BccI CCATC 4 cut(s) 371, 653, 1394, 1525
BciT130I CCWGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
BcoDI GTCTC 2 cut(s) 1211, 1453
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 2 cut(s) 864, 990
BisI GCNGC 5 cut(s) 12, 64, 495, 990, 1080
BlsI GCNGC 5 cut(s) 13, 65, 496, 991, 1081
Bme1390I CCNGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
Bme18I GGWCC 3 cut(s) 38, 260, 1010
BmgT120I GGNCC 7 cut(s) 38, 56, 260, 995, 1010, 1298, 1687
BmiI GGNNCC 5 cut(s) 391, 457, 1117, 1315, 1330
BmrFI CCNGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
BmsI GCATC 2 cut(s) 990, 1402
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 4 cut(s) 442, 1275, 1278, 1431
BpuEI CTTGAG 1 cut(s) 1585
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 1211
BsaJI CCNNGG 4 cut(s) 34, 58, 1252, 1317
BsaXI ACNNNNNCTCC 2 cut(s) 1276, 1306
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 1295
Bse1I ACTGG 4 cut(s) 706, 958, 1034, 1244
Bse21I CCTNAGG 1 cut(s) 1095
Bse3DI GCAATG 2 cut(s) 201, 998
BseBI CCWGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
BseDI CCNNGG 4 cut(s) 34, 58, 1252, 1317
BseGI GGATG 3 cut(s) 325, 850, 1248
BseLI CCNNNNNNNGG 2 cut(s) 478, 1295
BseMI GCAATG 2 cut(s) 201, 998
BseMII CTCAG 2 cut(s) 1109, 1638
BseNI ACTGG 4 cut(s) 706, 958, 1034, 1244
BseRI GAGGAG 3 cut(s) 99, 1471, 1631
BseXI GCAGC 4 cut(s) 50, 481, 976, 1091
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 45, 72
BshFI GGCC 8 cut(s) 57, 170, 858, 917, 997, 1087, 1299, 1688
BshNI GGYRCC 2 cut(s) 1115, 1313
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 2 cut(s) 478, 1295
BsmAI GTCTC 2 cut(s) 1211, 1453
BsmBI CGTCTC 1 cut(s) 1453
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 8 cut(s) 57, 170, 858, 917, 997, 1087, 1299, 1688
Bso31I GGTCTC 1 cut(s) 1211
Bsp1286I GDGCHC 1 cut(s) 1103
Bsp143I GATC 4 cut(s) 102, 445, 1164, 1210
BspACI CCGC 4 cut(s) 12, 70, 358, 561
BspANI GGCC 8 cut(s) 57, 170, 858, 917, 997, 1087, 1299, 1688
BspCNI CTCAG 2 cut(s) 1108, 1639
BspFNI CGCG 2 cut(s) 45, 72
BspLI GGNNCC 5 cut(s) 391, 457, 1117, 1315, 1330
BspMAI CTGCAG 1 cut(s) 994
BspPI GGATC 2 cut(s) 453, 1205
BspT107I GGYRCC 2 cut(s) 1115, 1313
BspTNI GGTCTC 1 cut(s) 1211
BsrDI GCAATG 2 cut(s) 201, 998
BsrI ACTGG 4 cut(s) 706, 958, 1034, 1244
BssECI CCNNGG 4 cut(s) 34, 58, 1252, 1317
BssMI GATC 4 cut(s) 102, 445, 1164, 1210
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
Bst4CI ACNGT 2 cut(s) 890, 1498
Bst6I CTCTTC 3 cut(s) 561, 651, 657
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 4 cut(s) 55, 1044, 1175, 1233
BstDEI CTNAG 3 cut(s) 1095, 1161, 1647
BstEII GGTNACC 1 cut(s) 877
BstENI CCTNNNNNAGG 1 cut(s) 1293
BstF5I GGATG 3 cut(s) 325, 850, 1248
BstFNI CGCG 2 cut(s) 45, 72
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 4 cut(s) 105, 448, 1167, 1213
BstMAI GTCTC 2 cut(s) 1211, 1453
BstMBI GATC 4 cut(s) 102, 445, 1164, 1210
BstMWI GCNNNNNNNGC 5 cut(s) 63, 69, 1079, 1154, 1179
BstNI CCWGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
BstPI GGTNACC 1 cut(s) 877
BstSCI CCNGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
BstSFI CTRYAG 2 cut(s) 864, 990
BstUI CGCG 2 cut(s) 45, 72
BstV1I GCAGC 4 cut(s) 50, 481, 976, 1091
BstV2I GAAGAC 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 1518
Bsu36I CCTNAGG 1 cut(s) 1095
BsuRI GGCC 8 cut(s) 57, 170, 858, 917, 997, 1087, 1299, 1688
BtsCI GGATG 3 cut(s) 325, 850, 1248
BtsIMutI CAGTG 4 cut(s) 699, 1027, 1644, 1693
Cac8I GCNNGC 4 cut(s) 55, 1044, 1175, 1233
CaiI CAGNNNCTG 2 cut(s) 1301, 1481
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 7 cut(s) 38, 56, 260, 995, 1010, 1298, 1687
CseI GACGC 4 cut(s) 34, 799, 1470, 1487
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 4 cut(s) 595, 1116, 1484, 1591
CviAII CATG 5 cut(s) 339, 369, 577, 782, 1340
CviQI GTAC 4 cut(s) 595, 1116, 1484, 1591
DdeI CTNAG 3 cut(s) 1095, 1161, 1647
DpnI GATC 4 cut(s) 104, 447, 1166, 1212
DpnII GATC 4 cut(s) 102, 445, 1164, 1210
DraIII CACNNNGTG 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 561, 651, 657
EarI CTCTTC 3 cut(s) 561, 651, 657
Eco147I AGGCCT 1 cut(s) 1087
Eco24I GRGCYC 1 cut(s) 1103
Eco31I GGTCTC 1 cut(s) 1211
Eco32I GATATC 3 cut(s) 735, 1200, 1657
Eco47I GGWCC 3 cut(s) 38, 260, 1010
Eco57I CTGAAG 2 cut(s) 445, 585
Eco81I CCTNAGG 1 cut(s) 1095
Eco91I GGTNACC 1 cut(s) 877
EcoNI CCTNNNNNAGG 1 cut(s) 1293
EcoO109I RGGNCCY 1 cut(s) 1298
EcoO65I GGTNACC 1 cut(s) 877
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
EcoRV GATATC 3 cut(s) 735, 1200, 1657
EcoT22I ATGCAT 1 cut(s) 1672
EcoT38I GRGCYC 1 cut(s) 1103
Esp3I CGTCTC 1 cut(s) 1453
FaeI CATG 5 cut(s) 342, 372, 580, 785, 1343
FaqI GGGAC 1 cut(s) 530
FatI CATG 5 cut(s) 338, 368, 576, 781, 1339
FauI CCCGC 2 cut(s) 77, 568
FauNDI CATATG 1 cut(s) 1204
Fnu4HI GCNGC 5 cut(s) 12, 64, 495, 990, 1080
FokI GGATG 3 cut(s) 332, 837, 1235
FriOI GRGCYC 1 cut(s) 1103
Fsp4HI GCNGC 5 cut(s) 12, 64, 495, 990, 1080
FspBI CTAG 1 cut(s) 978
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 12, 64, 495, 990, 1080
GsuI CTGGAG 4 cut(s) 442, 1275, 1278, 1431
HaeIII GGCC 8 cut(s) 57, 170, 858, 917, 997, 1087, 1299, 1688
HgaI GACGC 4 cut(s) 34, 799, 1470, 1487
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 5 cut(s) 342, 372, 580, 785, 1343
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 6 cut(s) 27, 632, 772, 836, 927, 1444
HphI GGTGA 2 cut(s) 82, 599
Hpy166II GTNNAC 4 cut(s) 49, 301, 573, 1192
Hpy188I TCNGA 5 cut(s) 132, 389, 450, 1058, 1616
Hpy188III TCNNGA 8 cut(s) 656, 707, 730, 1214, 1363, 1397, 1448, 1584
Hpy8I GTNNAC 4 cut(s) 49, 301, 573, 1192
HpyAV CCTTC 5 cut(s) 469, 483, 704, 800, 1581
HpyCH4III ACNGT 2 cut(s) 890, 1498
HpyCH4IV ACGT 2 cut(s) 303, 846
HpyCH4V TGCA 9 cut(s) 66, 619, 692, 823, 992, 1079, 1304, 1574, 1670
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 69, 1079, 1154, 1179
HpyF3I CTNAG 3 cut(s) 1095, 1161, 1647
HpySE526I ACGT 2 cut(s) 303, 846
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 5 cut(s) 342, 372, 580, 785, 1343
HspAI GCGC 1 cut(s) 9
KpnI GGTACC 1 cut(s) 1119
Kzo9I GATC 4 cut(s) 102, 445, 1164, 1210
LmnI GCTCC 2 cut(s) 153, 809
Lsp1109I GCAGC 4 cut(s) 50, 481, 976, 1091
LweI GCATC 2 cut(s) 990, 1402
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 978
MaeII ACGT 2 cut(s) 303, 846
MaeIII GTNAC 3 cut(s) 277, 464, 877
MalI GATC 4 cut(s) 104, 447, 1166, 1212
MboI GATC 4 cut(s) 102, 445, 1164, 1210
MboII GAAGA 7 cut(s) 22, 578, 638, 644, 656, 688, 953
MfeI CAATTG 3 cut(s) 267, 394, 1604
MhlI GDGCHC 1 cut(s) 1103
MlyI GAGTC 2 cut(s) 626, 1438
MmeI TCCRAC 5 cut(s) 287, 297, 1037, 1402, 1499
Mph1103I ATGCAT 1 cut(s) 1672
MseI TTAA 6 cut(s) 243, 309, 351, 1122, 1245, 1263
MslI CAYNNNNRTG 1 cut(s) 1398
MspA1I CMGCKG 2 cut(s) 358, 563
MspR9I CCNGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
MunI CAATTG 3 cut(s) 267, 394, 1604
MvaI CCWGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
MvnI CGCG 2 cut(s) 45, 72
MwoI GCNNNNNNNGC 5 cut(s) 63, 69, 1079, 1154, 1179
NdeI CATATG 1 cut(s) 1204
NdeII GATC 4 cut(s) 102, 445, 1164, 1210
NlaIII CATG 5 cut(s) 342, 372, 580, 785, 1343
NlaIV GGNNCC 5 cut(s) 391, 457, 1117, 1315, 1330
NmuCI GTSAC 1 cut(s) 277
NsiI ATGCAT 1 cut(s) 1672
PceI AGGCCT 1 cut(s) 1087
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 1353
PfeI GAWTC 4 cut(s) 27, 772, 836, 927
PkrI GCNGC 5 cut(s) 13, 65, 496, 991, 1081
PleI GAGTC 2 cut(s) 626, 1438
PpsI GAGTC 2 cut(s) 626, 1438
PshBI ATTAAT 2 cut(s) 243, 309
PsiI TTATAA 1 cut(s) 671
Psp6I CCWGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
PspEI GGTNACC 1 cut(s) 877
PspGI CCWGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
PspN4I GGNNCC 5 cut(s) 391, 457, 1117, 1315, 1330
PspPI GGNCC 7 cut(s) 38, 56, 260, 995, 1010, 1298, 1687
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 2 cut(s) 1301, 1481
RsaI GTAC 4 cut(s) 596, 1117, 1485, 1592
RsaNI GTAC 4 cut(s) 595, 1116, 1484, 1591
RseI CAYNNNNRTG 1 cut(s) 1398
SaqAI TTAA 6 cut(s) 243, 309, 351, 1122, 1245, 1263
SatI GCNGC 5 cut(s) 12, 64, 495, 990, 1080
Sau3AI GATC 4 cut(s) 102, 445, 1164, 1210
Sau96I GGNCC 7 cut(s) 38, 56, 260, 995, 1010, 1298, 1687
SchI GAGTC 2 cut(s) 626, 1438
ScrFI CCNGG 8 cut(s) 60, 94, 258, 855, 1048, 1084, 1254, 1296
SduI GDGCHC 1 cut(s) 1103
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 2 cut(s) 990, 1402
SfcI CTRYAG 2 cut(s) 864, 990
SinI GGWCC 3 cut(s) 38, 260, 1010
SmiMI CAYNNNNRTG 1 cut(s) 1398
SmlI CTYRAG 1 cut(s) 1564
SmoI CTYRAG 1 cut(s) 1564
SseBI AGGCCT 1 cut(s) 1087
SsiI CCGC 4 cut(s) 12, 70, 358, 561
SspMI CTAG 1 cut(s) 978
StuI AGGCCT 1 cut(s) 1087
StyD4I CCNGG 8 cut(s) 58, 92, 256, 853, 1046, 1082, 1252, 1294
TaaI ACNGT 2 cut(s) 890, 1498
TaiI ACGT 2 cut(s) 306, 849
TaqI TCGA 4 cut(s) 25, 101, 226, 964
TaqII GACCGA 2 cut(s) 26, 1309
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 4 cut(s) 27, 772, 836, 927
Tru1I TTAA 6 cut(s) 243, 309, 351, 1122, 1245, 1263
Tru9I TTAA 6 cut(s) 243, 309, 351, 1122, 1245, 1263
TscAI CASTG 3 cut(s) 706, 1034, 1651
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 4 cut(s) 63, 494, 989, 1079
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 8 cut(s) 17, 336, 476, 671, 839, 849, 898, 1052
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 3 cut(s) 706, 1034, 1651
VpaK11BI GGWCC 3 cut(s) 38, 260, 1010
VspI ATTAAT 2 cut(s) 243, 309
XagI CCTNNNNNAGG 1 cut(s) 1293
XapI RAATTY 3 cut(s) 725, 957, 1063
XcmI CCANNNNNNNNNTGG 2 cut(s) 56, 417
XspI CTAG 1 cut(s) 978
ZraI GACGTC 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.