RchiOBHm_Chr2g0110291

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
21776080 .. 21777077
998 bp
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UTR
Exon/CDS
Intron
PRQ48399

Sequence Viewer

Length: 453 bp
ATGATGAAGGTGATGGTCAGTTCCTTCTTGTATGAGTTCATGCCAAATGGTAGCCTTGAATCTCACCTCTGTGGGAAAAGTAGGTCTACTGATATACTACCCTGGGTTGAGAAATACAAGATATCTCAGGGTTTGGCATCTGCATTGCTTTATCTTAACGAAGGCTGGAACAGGCAGCAATGCATGGTGCACCAAGATACAACTGGATTGGCTGGAACACGGGGTTACTTGGCTCCAGAGTATCTAAGCACAGGTAAGGCTAGTAAAGAGTCAGATGTCCATAGCTTTGCGGTGGTTGCAGAGATTGCTGCTGGGAAAAAGTCATTGGTTCCTATTACAAATGATTCGGAAATGGGATTGGTGGAGTGGGTTTGGGACCGTTATGGAAAAGAACAGCTTCTTTTGCAAATGTCTGAGATAGTCAGTGGAATGTCTAGAGGCTTCGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

5.9

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018968)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 86
AciI CCGC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 69
AluBI AGCT 2 cut(s) 285, 397
AluI AGCT 2 cut(s) 285, 397
Alw21I GWGCWC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 188
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 175, 308
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 22, 56
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 187, 295
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 103
BfaI CTAG 2 cut(s) 261, 435
BisI GCNGC 2 cut(s) 176, 309
BlsI GCNGC 2 cut(s) 177, 310
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 234, 330, 377
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 101, 102
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 2 cut(s) 143, 185
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 101, 102
BseMI GCAATG 2 cut(s) 143, 185
BseMII CTCAG 2 cut(s) 140, 405
BseNI ACTGG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 2 cut(s) 187, 295
BseYI CCCAGC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 139, 406
BspLI GGNNCC 3 cut(s) 234, 330, 377
BsrDI GCAATG 2 cut(s) 143, 185
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 101, 102
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 126, 245, 414
BstMWI GCNNNNNNNGC 3 cut(s) 296, 305, 403
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 187, 295
BtsIMutI CAGTG 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 376
CviAII CATG 2 cut(s) 40, 184
CviJI RGCY 8 cut(s) 54, 165, 212, 233, 260, 285, 397, 441
CviKI_1 RGCY 8 cut(s) 54, 165, 212, 233, 260, 285, 397, 441
DdeI CTNAG 3 cut(s) 126, 245, 414
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 185
FaeI CATG 2 cut(s) 43, 187
FaiI YATR 6 cut(s) 33, 41, 95, 185, 282, 384
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 39, 183
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 176, 309
Fsp4HI GCNGC 2 cut(s) 176, 309
FspBI CTAG 2 cut(s) 261, 435
GluI GCNGC 2 cut(s) 176, 309
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 219
Hin1II CATG 2 cut(s) 43, 187
HinfI GANTC 3 cut(s) 59, 269, 344
HphI GGTGA 2 cut(s) 22, 56
Hpy166II GTNNAC 2 cut(s) 87, 190
Hpy188I TCNGA 3 cut(s) 274, 349, 415
Hpy188III TCNNGA 2 cut(s) 236, 435
Hpy8I GTNNAC 2 cut(s) 87, 190
HpyAV CCTTC 2 cut(s) 34, 155
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 143, 183, 190, 299, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 305, 403
HpyF3I CTNAG 3 cut(s) 126, 245, 414
Hsp92II CATG 2 cut(s) 43, 187
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 187, 295
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 261, 435
MaeIII GTNAC 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 2 cut(s) 77, 431
Mph1103I ATGCAT 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 296, 305, 403
NlaIII CATG 2 cut(s) 43, 187
NlaIV GGNNCC 3 cut(s) 234, 330, 377
NsiI ATGCAT 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 69
PasI CCCWGGG 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 59, 344
PkrI GCNGC 2 cut(s) 177, 310
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 234, 330, 377
PspPI GGNCC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 176, 309
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 12, 69, 86, 256, 287, 399
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 69
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 261, 435
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 380
TfiI GAWTC 2 cut(s) 59, 344
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 430
TseI GCWGC 2 cut(s) 175, 308
TspDTI ATGAA 2 cut(s) 20, 28
TspRI CASTG 1 cut(s) 430
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 376
XbaI TCTAGA 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 2 cut(s) 261, 435
Zsp2I ATGCAT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.