RLG00000028036

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018968
Physical Location & Seq
Forward (+)
17921484 .. 17922616
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028036

Sequence Viewer

Length: 468 bp
ATGAAGCGCGGATATGTTGAAGATGGAATTGTCTATGAAGGTGATGCTCGCCCTTCATCGGGAGTGCTTGAGATCAACGCAAGCAATTATTTCTGTGCTAGACATACTACGTATGCAGACCCTTTGCACCTATGGGACACTGCTACTAGGTCACTGGCAGACATCACTATTCATTTCACTTTCGTGGTCAACTTTAGTTCTACTCATGATGGGTACAGCGATGGAATGGCCTTTTTCCTTGCTCCTATTAGCTACCATATTCCACCCAACTCTGGCAGTGCTGAAGTGGGATTATTCAACTCCACCACCAATAATAATGCCTTGTCCAGAAACCAGATTATAGTCTTAGAGTTCGACACTTGGGCAAACGAATGGGATCCAGCCGGGCCGCATGTTAGAGCTTTTTCCACCCACCTAAGTGGGTGCTCACCGGGGTGTTTAACAGCGCGTGTACACACGCTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

156

Amino Acids

17.02

Weight (kDa)

5.46

Isoelectric Point (pI)

28.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 9 - 132 2.8e-24 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018968)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110281 RchiOBHm_Chr2g0110291
rosa_laevigata RLG00000023392 RLG00000028036
rosa_multiflora Rmu_co8372751.1_g000001
rosa_roxburghii Rroxscaffold_2G00133610 Rroxscaffold_2G00133620
rosa_samantha Rh2DG224900
rosa_wichuraiana Rw2G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 9, 448
AciI CCGC 2 cut(s) 9, 389
AclWI GGATC 2 cut(s) 371, 384
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 2 cut(s) 215, 453
AfiI CCNNNNNNNGG 3 cut(s) 58, 59, 272
AgsI TTSAA 2 cut(s) 20, 298
AleI CACNNNNGTG 3 cut(s) 182, 417, 433
AluBI AGCT 2 cut(s) 252, 401
AluI AGCT 2 cut(s) 252, 401
Alw21I GWGCWC 1 cut(s) 428
AlwI GGATC 2 cut(s) 371, 384
AoxI GGCC 2 cut(s) 228, 386
AspLEI GCGC 2 cut(s) 9, 448
AspS9I GGNCC 1 cut(s) 386
AsuC2I CCSGG 2 cut(s) 385, 432
AsuHPI GGTGA 2 cut(s) 53, 420
BamHI GGATCC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 3 cut(s) 17, 203, 215
BcnI CCSGG 2 cut(s) 385, 432
BfaI CTAG 2 cut(s) 99, 147
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 385, 432
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 385, 432
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 2 cut(s) 385, 432
BsaAI YACGTR 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 59, 272
Bse1I ACTGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 431
BseLI CCNNNNNNNGG 3 cut(s) 58, 59, 272
BseNI ACTGG 1 cut(s) 159
Bsh1236I CGCG 2 cut(s) 9, 448
BshFI GGCC 2 cut(s) 230, 388
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 2 cut(s) 384, 431
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 58, 59, 272
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 230, 388
Bsp1286I GDGCHC 1 cut(s) 428
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 72, 376
BspACI CCGC 2 cut(s) 9, 389
BspANI GGCC 2 cut(s) 230, 388
BspFNI CGCG 2 cut(s) 9, 448
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 2 cut(s) 371, 384
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 72, 376
BstAUI TGTACA 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 49, 82
BstDEI CTNAG 2 cut(s) 346, 416
BstFNI CGCG 2 cut(s) 9, 448
BstHHI GCGC 2 cut(s) 9, 448
BstKTI GATC 2 cut(s) 75, 379
BstMBI GATC 2 cut(s) 72, 376
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 383, 430
BstSNI TACGTA 1 cut(s) 111
BstUI CGCG 2 cut(s) 9, 448
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 2 cut(s) 230, 388
BtgZI GCGATG 1 cut(s) 234
BtsI GCAGTG 2 cut(s) 138, 283
BtsIMutI CAGTG 3 cut(s) 138, 152, 283
Cac8I GCNNGC 2 cut(s) 49, 82
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 9, 448
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 214, 452
CviAII CATG 2 cut(s) 206, 392
CviJI RGCY 5 cut(s) 230, 252, 383, 388, 401
CviKI_1 RGCY 5 cut(s) 230, 252, 383, 388, 401
CviQI GTAC 2 cut(s) 214, 452
DdeI CTNAG 2 cut(s) 346, 416
DpnI GATC 2 cut(s) 74, 378
DpnII GATC 2 cut(s) 72, 376
Eco105I TACGTA 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 303
FaeI CATG 2 cut(s) 209, 395
FaiI YATR 9 cut(s) 15, 36, 105, 114, 133, 207, 258, 341, 393
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 205, 391
Fnu4HI GCNGC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 2 cut(s) 99, 147
GlaI GCGC 2 cut(s) 8, 447
GluI GCNGC 1 cut(s) 389
HaeIII GGCC 2 cut(s) 230, 388
HapII CCGG 2 cut(s) 384, 431
HhaI GCGC 2 cut(s) 9, 448
Hin1II CATG 2 cut(s) 209, 395
Hin6I GCGC 2 cut(s) 7, 446
HinP1I GCGC 2 cut(s) 7, 446
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HpaII CCGG 2 cut(s) 384, 431
HphI GGTGA 2 cut(s) 53, 420
Hpy166II GTNNAC 3 cut(s) 190, 452, 454
Hpy188III TCNNGA 3 cut(s) 60, 206, 327
Hpy8I GTNNAC 3 cut(s) 190, 452, 454
HpyAV CCTTC 2 cut(s) 32, 63
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 116, 127
HpyF3I CTNAG 2 cut(s) 346, 416
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 209, 395
HspAI GCGC 2 cut(s) 7, 446
Kzo9I GATC 2 cut(s) 72, 376
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 7 cut(s) 140, 258, 340, 347, 393, 397, 444
LweI GCATC 1 cut(s) 34
MaeI CTAG 2 cut(s) 99, 147
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 74, 378
MboI GATC 2 cut(s) 72, 376
MboII GAAGA 1 cut(s) 32
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 2 cut(s) 27, 85
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 3 cut(s) 182, 417, 433
MspI CCGG 2 cut(s) 384, 431
MspR9I CCNGG 2 cut(s) 385, 432
MvnI CGCG 2 cut(s) 9, 448
NciI CCSGG 2 cut(s) 385, 432
NdeII GATC 2 cut(s) 72, 376
NlaIII CATG 2 cut(s) 209, 395
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 150
NspI RCATGY 1 cut(s) 395
OliI CACNNNNGTG 3 cut(s) 182, 417, 433
PagI TCATGA 1 cut(s) 205
PkrI GCNGC 1 cut(s) 390
Ppu21I YACGTR 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 386
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 215, 453
RsaNI GTAC 2 cut(s) 214, 452
RseI CAYNNNNRTG 3 cut(s) 182, 417, 433
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 2 cut(s) 72, 376
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 385, 432
SduI GDGCHC 1 cut(s) 428
SetI ASST 7 cut(s) 43, 113, 132, 152, 254, 403, 417
SfaNI GCATC 1 cut(s) 34
SmiMI CAYNNNNRTG 3 cut(s) 182, 417, 433
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SnaBI TACGTA 1 cut(s) 111
Sse9I AATT 2 cut(s) 27, 85
SsiI CCGC 2 cut(s) 9, 389
SspMI CTAG 2 cut(s) 99, 147
StyD4I CCNGG 2 cut(s) 383, 430
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 354
TasI AATT 2 cut(s) 27, 85
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 3 cut(s) 145, 159, 283
TseFI GTSAC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 4 cut(s) 17, 45, 51, 161
TspRI CASTG 3 cut(s) 145, 159, 283
XceI RCATGY 1 cut(s) 395
XspI CTAG 2 cut(s) 99, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.