Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018968

Physical Location & Seq

Genomic Coordinates Forward (+)

21863723 .. 21864340

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTCAAAGGGTACGGCTCTGGGACTCTAGTAAAGCTCACTGACTTCACAACTCACTTCTCATTCATCATTGACACAGATGGTTACCCTACTTATGGCCATGGAATTGCATTCTTTCTCGCTCCTGTTGGATTTCAACTCCCACCAAATTCAGTTGGTGGCTTTCTAGGCTTGTTCAACACAACAACCAGTGACTCCTCCGGCAACAAGATTGTTCTAGTTGAGTTTGACTCCTTTATAAACCCTGAATGGGATCCTGGTTATCAGCATGTAGGGATTAACAACAACTCAATTTCTTCTTCTGTCTCAACCCCTTGGAATGCTAGCTTACACAGTGGAGACACCACTGATGTATGGATTGTCTACAATGCAACAACTAAAAATCTTAGTGTTCACTGGAGCTACCAAAATACCTCGACTCCAAAAGAGAACACTGCCACTCTACCAGTCTTCATTACCCGCTTGATCTCAAGAAAATTTTGCCCGAGTGGATCACAATTGGATTTTCAGCTGCTACTAGTCAGTTTGGGGAGCGAAATTGGCTTGTTTCATGGGAGTTTAGTTCAATTTTGGATAGAAAAGAAACTACTGGAAAGAACACAAAGAAGAAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

205

Amino Acids

22.72

Weight (kDa)

6.58

Isoelectric Point (pI)

20.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	12 - 149	1.8e-40	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110281 RchiOBHm_Chr2g0110291
rosa_laevigata	RLG00000023392 RLG00000028036
rosa_multiflora	Rmu_co8372751.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133610 Rroxscaffold_2G00133620
rosa_samantha	Rh2DG224900
rosa_wichuraiana	Rw2G016880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	248, 261, 499
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	148, 476
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	95, 250
AgsI	TTSAA	3 cut(s)	137, 178, 566
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	37, 327, 402, 511
AluI	AGCT	4 cut(s)	37, 327, 402, 511
Alw26I	GTCTC	2 cut(s)	310, 333
AlwI	GGATC	3 cut(s)	248, 261, 499
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	148, 476
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	484
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	310, 333
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	5 cut(s)	29, 167, 218, 324, 518
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	100, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 250
Bse1I	ACTGG	4 cut(s)	189, 401, 446, 594
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	100, 314
BseLI	CCNNNNNNNGG	2 cut(s)	95, 250
BseNI	ACTGG	4 cut(s)	189, 401, 446, 594
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	498
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	95, 250
BsmAI	GTCTC	2 cut(s)	310, 333
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	110, 325
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	253, 465, 491
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	3 cut(s)	248, 261, 499
BsrI	ACTGG	4 cut(s)	189, 401, 446, 594
BssECI	CCNNGG	2 cut(s)	100, 314
BssMI	GATC	3 cut(s)	253, 465, 491
BssT1I	CCWWGG	2 cut(s)	100, 314
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	83
BstKTI	GATC	3 cut(s)	256, 468, 494
BstMAI	GTCTC	2 cut(s)	310, 333
BstMBI	GATC	3 cut(s)	253, 465, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 540
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	6 cut(s)	39, 196, 340, 345, 394, 432
Cac8I	GCNNGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	101, 269, 551
CviJI	RGCY	9 cut(s)	18, 37, 99, 162, 171, 327, 402, 511, 543
CviKI_1	RGCY	9 cut(s)	18, 37, 99, 162, 171, 327, 402, 511, 543
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	3 cut(s)	255, 467, 493
DpnII	GATC	3 cut(s)	253, 465, 491
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	100, 314
Eco88I	CYCGRG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	100, 314
ErhI	CCWWGG	2 cut(s)	100, 314
FaeI	CATG	3 cut(s)	104, 272, 554
FaiI	YATR	6 cut(s)	96, 102, 239, 270, 355, 552
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	100, 268, 550
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	5 cut(s)	29, 167, 218, 324, 518
GluI	GCNGC	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	104, 272, 554
HinfI	GANTC	4 cut(s)	25, 194, 230, 418
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	364, 394
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	2 cut(s)	364, 394
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	110, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 540
HpyF3I	CTNAG	1 cut(s)	386
Hsp92II	CATG	3 cut(s)	104, 272, 554
Kzo9I	GATC	3 cut(s)	253, 465, 491
LmnI	GCTCC	3 cut(s)	127, 399, 531
Lsp1109I	GCAGC	1 cut(s)	498
MaeI	CTAG	5 cut(s)	29, 167, 218, 324, 518
MaeIII	GTNAC	2 cut(s)	83, 191
MalI	GATC	3 cut(s)	255, 467, 493
MboI	GATC	3 cut(s)	253, 465, 491
MboII	GAAGA	4 cut(s)	288, 291, 442, 618
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	8 cut(s)	105, 148, 291, 476, 497, 537, 566, 613
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	4 cut(s)	19, 188, 224, 412
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	208, 424
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	497
Mva1269I	GAATGC	2 cut(s)	110, 325
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	168, 540
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	253, 465, 491
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	104, 272, 554
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	272
PctI	GAATGC	2 cut(s)	110, 325
PkrI	GCNGC	1 cut(s)	513
PleI	GAGTC	4 cut(s)	19, 188, 224, 412
PpsI	GAGTC	4 cut(s)	19, 188, 224, 412
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	253, 465, 491
SchI	GAGTC	4 cut(s)	19, 188, 224, 412
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	5 cut(s)	39, 329, 404, 416, 513
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	8 cut(s)	105, 148, 291, 476, 497, 537, 566, 613
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	5 cut(s)	29, 167, 218, 324, 518
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	100, 314
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	416
TasI	AATT	8 cut(s)	105, 148, 291, 476, 497, 537, 566, 613
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	6 cut(s)	46, 196, 340, 352, 401, 439
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	55, 442, 539
TspRI	CASTG	6 cut(s)	46, 196, 340, 352, 401, 439
XapI	RAATTY	2 cut(s)	148, 476
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	5 cut(s)	29, 167, 218, 324, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.