RLG00000023392

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018968
Physical Location & Seq
Forward (+)
23006379 .. 23006765
387 bp
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UTR
Exon/CDS
Intron
RLM00000023392

Sequence Viewer

Length: 387 bp
ATGCTCTGCGTAGGGCGGTTTACTTATACAAAGGCGCCTTTCCACCTGTGGAACTCTGCTACCCGGTCAGTAGCACACTTCAGTACCCATTTCACATTCCTGGTCGATACTTATGAAAAAGAAAATTACTGTGATGGATTTGCTTTTTTCCTTGCTCTCGTTGGCTATCCAATTCCACCCAACTCTGCTGGTAGTGTTCTTGGATTATTCAATAGCACCACTGCATTGTCCCATAACCGAATTGTCATGGTTGAGTTTGATACATTCCAAGATGATCATTGGGATCCCCCGAGACCCCATGTTGGGATCAATGTAAATAAAATCTCATTAGCCGTTACCACCAGCTTGGATTTCAGCAGCACCAAAGTGTGGTTAAGGCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.44

Weight (kDa)

6.63

Isoelectric Point (pI)

23.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 4 - 120 2.5e-32 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018968)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110281 RchiOBHm_Chr2g0110291
rosa_laevigata RLG00000023392 RLG00000028036
rosa_multiflora Rmu_co8372751.1_g000001
rosa_roxburghii Rroxscaffold_2G00133610 Rroxscaffold_2G00133620
rosa_samantha Rh2DG224900
rosa_wichuraiana Rw2G016880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 369
AciI CCGC 1 cut(s) 16
AclWI GGATC 3 cut(s) 278, 291, 314
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 302, 303, 369
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 99
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 3 cut(s) 278, 291, 314
Ama87I CYCGRG 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 67, 100
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 64, 101
BmeT110I CYCGRG 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 36, 285
BmrFI CCNGG 2 cut(s) 64, 101
BpuMI CCSGG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 286
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 303, 369
BseBI CCWGG 1 cut(s) 101
BseLI CCNNNNNNNGG 3 cut(s) 302, 303, 369
BseXI GCAGC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 302, 303, 369
BsmAI GTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 289
Bsp143I GATC 3 cut(s) 274, 283, 306
BspACI CCGC 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 36, 285
BspPI GGATC 3 cut(s) 278, 291, 314
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 286
BssMI GATC 3 cut(s) 274, 283, 306
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 277, 286, 309
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 3 cut(s) 274, 283, 306
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 62, 99
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 84
CviAII CATG 3 cut(s) 247, 299, 380
CviJI RGCY 3 cut(s) 165, 332, 345
CviKI_1 RGCY 3 cut(s) 165, 332, 345
CviQI GTAC 1 cut(s) 84
DinI GGCGCC 1 cut(s) 36
DpnI GATC 3 cut(s) 276, 285, 308
DpnII GATC 3 cut(s) 274, 283, 306
Eco31I GGTCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 99
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
FaeI CATG 3 cut(s) 250, 302, 383
FaiI YATR 6 cut(s) 27, 114, 234, 248, 300, 381
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 246, 298, 379
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 358
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 250, 302, 383
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 250, 302, 383
HspAI GCGC 1 cut(s) 35
KasI GGCGCC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 274, 283, 306
LpnPI CCDG 6 cut(s) 59, 77, 86, 113, 174, 355
Lsp1109I GCAGC 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 276, 285, 308
MboI GATC 3 cut(s) 274, 283, 306
MflI RGATCY 1 cut(s) 283
MluCI AATT 3 cut(s) 124, 171, 240
Mly113I GGCGCC 1 cut(s) 35
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 64, 101
MvaI CCWGG 1 cut(s) 101
NarI GGCGCC 1 cut(s) 35
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 274, 283, 306
NlaIII CATG 3 cut(s) 250, 302, 383
NlaIV GGNNCC 2 cut(s) 36, 285
OliI CACNNNNGTG 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 1 cut(s) 359
PluTI GGCGCC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 36, 285
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 3 cut(s) 274, 283, 306
ScrFI CCNGG 2 cut(s) 64, 101
SetI ASST 2 cut(s) 48, 347
SfoI GGCGCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 3 cut(s) 124, 171, 240
SsiI CCGC 1 cut(s) 16
SspDI GGCGCC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 62, 99
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 105
TasI AATT 3 cut(s) 124, 171, 240
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.