Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018968

Physical Location & Seq

Genomic Coordinates Reverse (-)

71059831 .. 71063647

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCCGAGAAGGTGCCACTCCGGGACCCTCAGACTAAGAAACTCACTGACTTCACAACCCATTTCTCATTCATTATTGACAAGGGGAGGTCTTGCCACATACATTGCATTTTCTCTAGCTCCTGTTGGTTTCCAAATCCCACCAAATTCAGCTGGTGGCTTCCTGAGCCTTTTCAACACCACAACCAGTGACTTCTCTTGGAACAAGATTGTTCTAGTTGAGTTCGATTCCTTTGTAAACACCGAATGGGATCCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

86

Amino Acids

9.49

Weight (kDa)

8.0

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	34 - 86	7.6e-09	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110281 RchiOBHm_Chr2g0110291
rosa_laevigata	RLG00000023392 RLG00000028036
rosa_multiflora	Rmu_co8372751.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133610 Rroxscaffold_2G00133620
rosa_samantha	Rh2DG224900
rosa_wichuraiana	Rw2G016880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	245, 258
AcsI	RAATTY	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	2 cut(s)	119, 152
AluI	AGCT	2 cut(s)	119, 152
AlwI	GGATC	2 cut(s)	245, 258
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	2 cut(s)	116, 215
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	4 cut(s)	14, 25, 26, 252
BmrFI	CCNGG	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	43, 155
BseNI	ACTGG	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	42, 156
BspLI	GGNNCC	4 cut(s)	14, 25, 26, 252
BspPI	GGATC	2 cut(s)	245, 258
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	29, 35, 164
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	44, 193
Cfr13I	GGNCC	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviJI	RGCY	4 cut(s)	119, 152, 159, 168
CviKI_1	RGCY	4 cut(s)	119, 152, 159, 168
DdeI	CTNAG	3 cut(s)	29, 35, 164
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	24
FaiI	YATR	2 cut(s)	100, 259
FaqI	GGGAC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	116, 215
HapII	CCGG	1 cut(s)	21
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	3
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	29, 35, 164
KflI	GGGWCCC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	34, 135, 138, 176, 199
MaeI	CTAG	2 cut(s)	116, 215
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	2 cut(s)	38, 80
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	250
NlaIV	GGNNCC	4 cut(s)	14, 25, 26, 252
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	14, 25, 26, 252
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	4 cut(s)	14, 91, 121, 154
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	116, 215
StyD4I	CCNGG	1 cut(s)	20
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	51, 193
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	51, 193
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	145
XspI	CTAG	2 cut(s)	116, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.