Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372751.1

Orthogroup ID

OG0018968

Physical Location & Seq

Genomic Coordinates Reverse (-)

320 .. 811

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgccaaatggtagccttgaatctcacttctgtgggaaaagtaggtctactgatatactaccctgggttgagagatacaagatatctcagggtttggcatctgcattgctttatcttaatgaaggctggaacaggcagcaatgcatggtgcaccaagatacaactggattggctggaacacgaggttacttggctccagagtatctaagcacaggtaaggctagtaaagagtcagatgtccatagctttggggtggttgcagagattgctgctgggaaaaagtcattggttcgtattacaaatgattcggaaatgggattggtggagtgggtttgggaccgttatggaaaagaaaagcttcttttgcaaatctctgagatagtcagtggaatgtctagaggcttcggcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

6.83

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110281 RchiOBHm_Chr2g0110291
rosa_laevigata	RLG00000023392 RLG00000028036
rosa_multiflora	Rmu_co8372751.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133610 Rroxscaffold_2G00133620
rosa_samantha	Rh2DG224900
rosa_wichuraiana	Rw2G016880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	246, 358
AluI	AGCT	2 cut(s)	246, 358
Alw21I	GWGCWC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	149
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	136, 269
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	148, 256
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	222, 396
BisI	GCNGC	2 cut(s)	137, 270
BlsI	GCNGC	2 cut(s)	138, 271
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	195, 338
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	62, 63
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	2 cut(s)	104, 146
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	62, 63
BseMI	GCAATG	2 cut(s)	104, 146
BseMII	CTCAG	2 cut(s)	101, 366
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	148, 256
BseYI	CCCAGC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	153
BspCNI	CTCAG	2 cut(s)	100, 367
BspLI	GGNNCC	2 cut(s)	195, 338
BsrDI	GCAATG	2 cut(s)	104, 146
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	62, 63
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	87, 206, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 364
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	148, 256
BstXI	CCANNNNNNTGG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	337
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	15, 126, 173, 194, 221, 246, 358, 402
CviKI_1	RGCY	8 cut(s)	15, 126, 173, 194, 221, 246, 358, 402
DdeI	CTNAG	3 cut(s)	87, 206, 375
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	146
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	56, 146, 243, 345
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	137, 270
Fsp4HI	GCNGC	2 cut(s)	137, 270
FspBI	CTAG	2 cut(s)	222, 396
GluI	GCNGC	2 cut(s)	137, 270
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	180
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	20, 230, 305
Hpy166II	GTNNAC	2 cut(s)	48, 151
Hpy188I	TCNGA	3 cut(s)	235, 310, 376
Hpy188III	TCNNGA	2 cut(s)	197, 396
Hpy8I	GTNNAC	2 cut(s)	48, 151
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	104, 144, 151, 260, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 364
HpyF3I	CTNAG	3 cut(s)	87, 206, 375
Hsp92II	CATG	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	148, 256
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	222, 396
MaeIII	GTNAC	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	176, 392
Mph1103I	ATGCAT	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	266, 364
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	195, 338
NsiI	ATGCAT	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	20, 305
PkrI	GCNGC	2 cut(s)	138, 271
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	195, 338
PspPI	GGNCC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	137, 270
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	5 cut(s)	47, 187, 217, 248, 360
SfaNI	GCATC	1 cut(s)	107
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	30
SspMI	CTAG	2 cut(s)	222, 396
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	20, 305
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	136, 269
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	337
XbaI	TCTAGA	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	222, 396
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.