Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981 |
| rosa_laevigata | RLG00000019007 |
| rosa_rugosa | Rorug02G0278900 |
| rosa_samantha | Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 488 |
| Acc36I | ACCTGC | 1 cut(s) | 740 |
| AciI | CCGC | 3 cut(s) | 105, 115, 672 |
| AcsI | RAATTY | 1 cut(s) | 247 |
| AcuI | CTGAAG | 2 cut(s) | 207, 356 |
| AfaI | GTAC | 2 cut(s) | 79, 330 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 507 |
| AgsI | TTSAA | 6 cut(s) | 220, 293, 300, 436, 698, 712 |
| AjiI | CACGTC | 1 cut(s) | 793 |
| AjnI | CCWGG | 2 cut(s) | 371, 760 |
| AluBI | AGCT | 3 cut(s) | 531, 624, 746 |
| AluI | AGCT | 3 cut(s) | 531, 624, 746 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AoxI | GGCC | 2 cut(s) | 556, 765 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| ApoI | RAATTY | 1 cut(s) | 247 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 571, 603 |
| AspS9I | GGNCC | 1 cut(s) | 765 |
| AsuC2I | CCSGG | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 3 cut(s) | 265, 461, 536 |
| BbvI | GCAGC | 1 cut(s) | 733 |
| BccI | CCATC | 2 cut(s) | 40, 226 |
| BciT130I | CCWGG | 2 cut(s) | 373, 762 |
| BcnI | CCSGG | 1 cut(s) | 175 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BfmI | CTRYAG | 1 cut(s) | 747 |
| BfuAI | ACCTGC | 1 cut(s) | 740 |
| BisI | GCNGC | 2 cut(s) | 106, 747 |
| BlsI | GCNGC | 2 cut(s) | 107, 748 |
| BmcAI | AGTACT | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 3 cut(s) | 175, 373, 762 |
| BmgBI | CACGTC | 1 cut(s) | 793 |
| BmgT120I | GGNCC | 1 cut(s) | 765 |
| BmiI | GGNNCC | 2 cut(s) | 243, 766 |
| BmrFI | CCNGG | 3 cut(s) | 175, 373, 762 |
| BmsI | GCATC | 1 cut(s) | 432 |
| BpuMI | CCSGG | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 2 cut(s) | 520, 761 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 507 |
| Bse3DI | GCAATG | 1 cut(s) | 684 |
| BseBI | CCWGG | 2 cut(s) | 373, 762 |
| BseDI | CCNNGG | 2 cut(s) | 520, 761 |
| BseGI | GGATG | 3 cut(s) | 67, 237, 367 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 507 |
| BseMI | GCAATG | 1 cut(s) | 684 |
| BseXI | GCAGC | 1 cut(s) | 733 |
| BshFI | GGCC | 2 cut(s) | 558, 767 |
| BsiSI | CCGG | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 507 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 558, 767 |
| BspACI | CCGC | 3 cut(s) | 105, 115, 672 |
| BspANI | GGCC | 2 cut(s) | 558, 767 |
| BspHI | TCATGA | 1 cut(s) | 562 |
| BspLI | GGNNCC | 2 cut(s) | 243, 766 |
| BspMAI | CTGCAG | 1 cut(s) | 751 |
| BspMI | ACCTGC | 1 cut(s) | 740 |
| BsrDI | GCAATG | 1 cut(s) | 684 |
| BssECI | CCNNGG | 2 cut(s) | 520, 761 |
| BssT1I | CCWWGG | 1 cut(s) | 520 |
| Bst2UI | CCWGG | 2 cut(s) | 373, 762 |
| Bst4CI | ACNGT | 1 cut(s) | 481 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 669 |
| BstC8I | GCNNGC | 2 cut(s) | 533, 744 |
| BstDEI | CTNAG | 1 cut(s) | 776 |
| BstF5I | GGATG | 3 cut(s) | 67, 237, 367 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 114, 669 |
| BstNI | CCWGG | 2 cut(s) | 373, 762 |
| BstSCI | CCNGG | 3 cut(s) | 173, 371, 760 |
| BstSFI | CTRYAG | 1 cut(s) | 747 |
| BstV1I | GCAGC | 1 cut(s) | 733 |
| BsuRI | GGCC | 2 cut(s) | 558, 767 |
| BtrI | CACGTC | 1 cut(s) | 793 |
| BtsCI | GGATG | 3 cut(s) | 67, 237, 367 |
| BtsIMutI | CAGTG | 1 cut(s) | 332 |
| BveI | ACCTGC | 1 cut(s) | 740 |
| Cac8I | GCNNGC | 2 cut(s) | 533, 744 |
| CciI | TCATGA | 1 cut(s) | 562 |
| Cfr13I | GGNCC | 1 cut(s) | 765 |
| Csp6I | GTAC | 2 cut(s) | 78, 329 |
| CviAII | CATG | 5 cut(s) | 268, 320, 506, 536, 563 |
| CviJI | RGCY | 5 cut(s) | 531, 558, 624, 746, 767 |
| CviKI_1 | RGCY | 5 cut(s) | 531, 558, 624, 746, 767 |
| CviQI | GTAC | 2 cut(s) | 78, 329 |
| DdeI | CTNAG | 1 cut(s) | 776 |
| Eco130I | CCWWGG | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 2 cut(s) | 207, 356 |
| EcoRI | GAATTC | 1 cut(s) | 247 |
| EcoRII | CCWGG | 2 cut(s) | 371, 760 |
| EcoT14I | CCWWGG | 1 cut(s) | 520 |
| ErhI | CCWWGG | 1 cut(s) | 520 |
| FaeI | CATG | 5 cut(s) | 271, 323, 509, 539, 566 |
| FatI | CATG | 5 cut(s) | 267, 319, 505, 535, 562 |
| Fnu4HI | GCNGC | 2 cut(s) | 106, 747 |
| FokI | GGATG | 3 cut(s) | 74, 244, 374 |
| Fsp4HI | GCNGC | 2 cut(s) | 106, 747 |
| GluI | GCNGC | 2 cut(s) | 106, 747 |
| HaeIII | GGCC | 2 cut(s) | 558, 767 |
| HapII | CCGG | 1 cut(s) | 174 |
| Hin1II | CATG | 5 cut(s) | 271, 323, 509, 539, 566 |
| HindIII | AAGCTT | 1 cut(s) | 529 |
| HinfI | GANTC | 2 cut(s) | 428, 511 |
| HpaII | CCGG | 1 cut(s) | 174 |
| HphI | GGTGA | 3 cut(s) | 265, 461, 536 |
| Hpy188I | TCNGA | 4 cut(s) | 45, 159, 187, 628 |
| Hpy188III | TCNNGA | 1 cut(s) | 563 |
| HpyAV | CCTTC | 2 cut(s) | 182, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 481 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 792 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 17, 274, 445, 535, 663, 677, 742, 749 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 114, 669 |
| HpyF3I | CTNAG | 1 cut(s) | 776 |
| HpySE526I | ACGT | 2 cut(s) | 6, 792 |
| Hsp92II | CATG | 5 cut(s) | 271, 323, 509, 539, 566 |
| LpnPI | CCDG | 8 cut(s) | 3, 187, 358, 385, 431, 735, 747, 774 |
| Lsp1109I | GCAGC | 1 cut(s) | 733 |
| LweI | GCATC | 1 cut(s) | 432 |
| MaeII | ACGT | 2 cut(s) | 6, 792 |
| MaeIII | GTNAC | 1 cut(s) | 793 |
| MboII | GAAGA | 1 cut(s) | 349 |
| MluCI | AATT | 5 cut(s) | 39, 236, 247, 614, 632 |
| MmeI | TCCRAC | 1 cut(s) | 703 |
| MnlI | CCTC | 4 cut(s) | 82, 222, 303, 351 |
| MseI | TTAA | 2 cut(s) | 138, 808 |
| MslI | CAYNNNNRTG | 2 cut(s) | 324, 567 |
| MspI | CCGG | 1 cut(s) | 174 |
| MspR9I | CCNGG | 3 cut(s) | 175, 373, 762 |
| MvaI | CCWGG | 2 cut(s) | 373, 762 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 114, 669 |
| NciI | CCSGG | 1 cut(s) | 175 |
| NlaIII | CATG | 5 cut(s) | 271, 323, 509, 539, 566 |
| NlaIV | GGNNCC | 2 cut(s) | 243, 766 |
| NmeAIII | GCCGAG | 1 cut(s) | 793 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| PagI | TCATGA | 1 cut(s) | 562 |
| PfeI | GAWTC | 2 cut(s) | 428, 511 |
| PfoI | TCCNGGA | 1 cut(s) | 371 |
| PkrI | GCNGC | 2 cut(s) | 107, 748 |
| PsiI | TTATAA | 1 cut(s) | 488 |
| Psp6I | CCWGG | 2 cut(s) | 371, 760 |
| PspGI | CCWGG | 2 cut(s) | 371, 760 |
| PspN4I | GGNNCC | 2 cut(s) | 243, 766 |
| PspPI | GGNCC | 1 cut(s) | 765 |
| PstI | CTGCAG | 1 cut(s) | 751 |
| RsaI | GTAC | 2 cut(s) | 79, 330 |
| RsaNI | GTAC | 2 cut(s) | 78, 329 |
| RseI | CAYNNNNRTG | 2 cut(s) | 324, 567 |
| SaqAI | TTAA | 2 cut(s) | 138, 808 |
| SatI | GCNGC | 2 cut(s) | 106, 747 |
| Sau96I | GGNCC | 1 cut(s) | 765 |
| ScaI | AGTACT | 1 cut(s) | 79 |
| ScrFI | CCNGG | 3 cut(s) | 175, 373, 762 |
| SfaNI | GCATC | 1 cut(s) | 432 |
| SfcI | CTRYAG | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 324, 567 |
| Sse9I | AATT | 5 cut(s) | 39, 236, 247, 614, 632 |
| SsiI | CCGC | 3 cut(s) | 105, 115, 672 |
| SspI | AATATT | 1 cut(s) | 379 |
| StyD4I | CCNGG | 3 cut(s) | 173, 371, 760 |
| StyI | CCWWGG | 1 cut(s) | 520 |
| TaaI | ACNGT | 1 cut(s) | 481 |
| TaiI | ACGT | 2 cut(s) | 9, 795 |
| TaqI | TCGA | 3 cut(s) | 164, 344, 401 |
| TasI | AATT | 5 cut(s) | 39, 236, 247, 614, 632 |
| TatI | WGTACW | 1 cut(s) | 77 |
| TauI | GCSGC | 1 cut(s) | 108 |
| TfiI | GAWTC | 2 cut(s) | 428, 511 |
| Tru1I | TTAA | 2 cut(s) | 138, 808 |
| Tru9I | TTAA | 2 cut(s) | 138, 808 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| TseI | GCWGC | 1 cut(s) | 746 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 7 cut(s) | 17, 144, 237, 308, 378, 551, 729 |
| TspRI | CASTG | 1 cut(s) | 339 |
| XapI | RAATTY | 1 cut(s) | 247 |
| ZrmI | AGTACT | 1 cut(s) | 79 |