Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981 |
| rosa_laevigata | RLG00000019007 |
| rosa_rugosa | Rorug02G0278900 |
| rosa_samantha | Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 587 |
| Acc65I | GGTACC | 1 cut(s) | 362 |
| AccB1I | GGYRCC | 1 cut(s) | 362 |
| AccII | CGCG | 1 cut(s) | 622 |
| AciI | CCGC | 4 cut(s) | 60, 519, 611, 622 |
| AcsI | RAATTY | 3 cut(s) | 211, 345, 380 |
| AcuI | CTGAAG | 2 cut(s) | 171, 390 |
| AfaI | GTAC | 2 cut(s) | 34, 364 |
| AgsI | TTSAA | 5 cut(s) | 184, 257, 264, 545, 559 |
| AjnI | CCWGG | 1 cut(s) | 415 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 323, 355 |
| AluBI | AGCT | 3 cut(s) | 323, 471, 593 |
| AluI | AGCT | 3 cut(s) | 323, 471, 593 |
| ApeKI | GCWGC | 2 cut(s) | 323, 593 |
| ApoI | RAATTY | 3 cut(s) | 211, 345, 380 |
| Asp718I | GGTACC | 1 cut(s) | 362 |
| AsuC2I | CCSGG | 1 cut(s) | 139 |
| AsuHPI | GGTGA | 1 cut(s) | 229 |
| BanI | GGYRCC | 1 cut(s) | 362 |
| BbvI | GCAGC | 2 cut(s) | 310, 580 |
| BccI | CCATC | 1 cut(s) | 190 |
| BciT130I | CCWGG | 1 cut(s) | 417 |
| BcnI | CCSGG | 1 cut(s) | 139 |
| BfmI | CTRYAG | 1 cut(s) | 594 |
| BfuAI | ACCTGC | 1 cut(s) | 587 |
| BisI | GCNGC | 4 cut(s) | 61, 324, 594, 612 |
| BlsI | GCNGC | 4 cut(s) | 62, 325, 595, 613 |
| BmcAI | AGTACT | 1 cut(s) | 34 |
| Bme1390I | CCNGG | 2 cut(s) | 139, 417 |
| BmiI | GGNNCC | 2 cut(s) | 207, 364 |
| BmrFI | CCNGG | 2 cut(s) | 139, 417 |
| BmsI | GCATC | 1 cut(s) | 396 |
| BpuMI | CCSGG | 1 cut(s) | 139 |
| Bse3DI | GCAATG | 1 cut(s) | 531 |
| BseBI | CCWGG | 1 cut(s) | 417 |
| BseGI | GGATG | 3 cut(s) | 22, 201, 411 |
| BseMI | GCAATG | 1 cut(s) | 531 |
| BseMII | CTCAG | 2 cut(s) | 341, 399 |
| BseXI | GCAGC | 2 cut(s) | 310, 580 |
| Bsh1236I | CGCG | 1 cut(s) | 622 |
| BshNI | GGYRCC | 1 cut(s) | 362 |
| BsiSI | CCGG | 1 cut(s) | 138 |
| BspACI | CCGC | 4 cut(s) | 60, 519, 611, 622 |
| BspCNI | CTCAG | 2 cut(s) | 340, 398 |
| BspFNI | CGCG | 1 cut(s) | 622 |
| BspLI | GGNNCC | 2 cut(s) | 207, 364 |
| BspMAI | CTGCAG | 1 cut(s) | 598 |
| BspMI | ACCTGC | 1 cut(s) | 587 |
| BspT107I | GGYRCC | 1 cut(s) | 362 |
| BsrDI | GCAATG | 1 cut(s) | 531 |
| Bst2UI | CCWGG | 1 cut(s) | 417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 1 cut(s) | 591 |
| BstDEI | CTNAG | 3 cut(s) | 311, 327, 385 |
| BstF5I | GGATG | 3 cut(s) | 22, 201, 411 |
| BstFNI | CGCG | 1 cut(s) | 622 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 516 |
| BstNI | CCWGG | 1 cut(s) | 417 |
| BstSCI | CCNGG | 2 cut(s) | 137, 415 |
| BstSFI | CTRYAG | 1 cut(s) | 594 |
| BstUI | CGCG | 1 cut(s) | 622 |
| BstV1I | GCAGC | 2 cut(s) | 310, 580 |
| BtsCI | GGATG | 3 cut(s) | 22, 201, 411 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| BveI | ACCTGC | 1 cut(s) | 587 |
| Cac8I | GCNNGC | 1 cut(s) | 591 |
| Csp6I | GTAC | 2 cut(s) | 33, 363 |
| CviAII | CATG | 2 cut(s) | 232, 284 |
| CviJI | RGCY | 3 cut(s) | 323, 471, 593 |
| CviKI_1 | RGCY | 3 cut(s) | 323, 471, 593 |
| CviQI | GTAC | 2 cut(s) | 33, 363 |
| DdeI | CTNAG | 3 cut(s) | 311, 327, 385 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 390 |
| EcoRI | GAATTC | 2 cut(s) | 211, 380 |
| EcoRII | CCWGG | 1 cut(s) | 415 |
| FaeI | CATG | 2 cut(s) | 235, 287 |
| FaiI | YATR | 9 cut(s) | 38, 144, 233, 268, 270, 285, 291, 351, 447 |
| FatI | CATG | 2 cut(s) | 231, 283 |
| Fnu4HI | GCNGC | 4 cut(s) | 61, 324, 594, 612 |
| FokI | GGATG | 3 cut(s) | 29, 208, 418 |
| Fsp4HI | GCNGC | 4 cut(s) | 61, 324, 594, 612 |
| GluI | GCNGC | 4 cut(s) | 61, 324, 594, 612 |
| HapII | CCGG | 1 cut(s) | 138 |
| Hin1II | CATG | 2 cut(s) | 235, 287 |
| HpaII | CCGG | 1 cut(s) | 138 |
| HphI | GGTGA | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 330, 475 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyCH4V | TGCA | 6 cut(s) | 123, 238, 510, 524, 589, 596 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 516 |
| HpyF3I | CTNAG | 3 cut(s) | 311, 327, 385 |
| Hsp92II | CATG | 2 cut(s) | 235, 287 |
| KpnI | GGTACC | 1 cut(s) | 366 |
| LmnI | GCTCC | 1 cut(s) | 320 |
| LpnPI | CCDG | 7 cut(s) | 151, 153, 372, 402, 429, 582, 621 |
| Lsp1109I | GCAGC | 2 cut(s) | 310, 580 |
| LweI | GCATC | 1 cut(s) | 396 |
| MaeIII | GTNAC | 2 cut(s) | 71, 217 |
| MboII | GAAGA | 1 cut(s) | 383 |
| MluCI | AATT | 7 cut(s) | 200, 211, 345, 356, 380, 461, 479 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| MnlI | CCTC | 4 cut(s) | 37, 186, 267, 395 |
| MseI | TTAA | 2 cut(s) | 102, 297 |
| MslI | CAYNNNNRTG | 2 cut(s) | 128, 288 |
| MspA1I | CMGCKG | 1 cut(s) | 611 |
| MspI | CCGG | 1 cut(s) | 138 |
| MspR9I | CCNGG | 2 cut(s) | 139, 417 |
| MvaI | CCWGG | 1 cut(s) | 417 |
| MvnI | CGCG | 1 cut(s) | 622 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 516 |
| NciI | CCSGG | 1 cut(s) | 139 |
| NlaIII | CATG | 2 cut(s) | 235, 287 |
| NlaIV | GGNNCC | 2 cut(s) | 207, 364 |
| NmuCI | GTSAC | 1 cut(s) | 217 |
| PfoI | TCCNGGA | 1 cut(s) | 415 |
| PkrI | GCNGC | 4 cut(s) | 62, 325, 595, 613 |
| Psp6I | CCWGG | 1 cut(s) | 415 |
| PspGI | CCWGG | 1 cut(s) | 415 |
| PspN4I | GGNNCC | 2 cut(s) | 207, 364 |
| PstI | CTGCAG | 1 cut(s) | 598 |
| RsaI | GTAC | 2 cut(s) | 34, 364 |
| RsaNI | GTAC | 2 cut(s) | 33, 363 |
| RseI | CAYNNNNRTG | 2 cut(s) | 128, 288 |
| SaqAI | TTAA | 2 cut(s) | 102, 297 |
| SatI | GCNGC | 4 cut(s) | 61, 324, 594, 612 |
| ScaI | AGTACT | 1 cut(s) | 34 |
| ScrFI | CCNGG | 2 cut(s) | 139, 417 |
| SetI | ASST | 6 cut(s) | 48, 325, 364, 473, 595, 601 |
| SfaNI | GCATC | 1 cut(s) | 396 |
| SfcI | CTRYAG | 1 cut(s) | 594 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 128, 288 |
| Sse9I | AATT | 7 cut(s) | 200, 211, 345, 356, 380, 461, 479 |
| SsiI | CCGC | 4 cut(s) | 60, 519, 611, 622 |
| SspI | AATATT | 1 cut(s) | 423 |
| StyD4I | CCNGG | 2 cut(s) | 137, 415 |
| TaqI | TCGA | 2 cut(s) | 128, 378 |
| TasI | AATT | 7 cut(s) | 200, 211, 345, 356, 380, 461, 479 |
| TatI | WGTACW | 1 cut(s) | 32 |
| TauI | GCSGC | 2 cut(s) | 63, 614 |
| Tru1I | TTAA | 2 cut(s) | 102, 297 |
| Tru9I | TTAA | 2 cut(s) | 102, 297 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TseFI | GTSAC | 1 cut(s) | 217 |
| TseI | GCWGC | 2 cut(s) | 323, 593 |
| Tsp45I | GTSAC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 4 cut(s) | 108, 201, 272, 576 |
| TspRI | CASTG | 1 cut(s) | 373 |
| XapI | RAATTY | 3 cut(s) | 211, 345, 380 |
| ZrmI | AGTACT | 1 cut(s) | 34 |