Rh2BG340400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019375
Physical Location & Seq
Forward (+)
45336379 .. 45337804
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG340400.1

Sequence Viewer

Length: 423 bp
ATGCACGTTAGATATGCAGGAATGGTTCATTCTTTGGCAATTCAGATGGGTTTTGGATTGGATGTGTATTTTGGCAGTACTATGATTGAGGTGTGTGTGAAATGCGGCAATCTCCGCAAGTTGTTTGATGAAATGCTTAACAGAGATTTAGTTTCTCGGACTTCGATGATTTCCGGGTATGTTTCTGAAGGAAATGTTGCTTTTGGGTTTAGTTTGTTCAATGAAATGAGGATGGAATTGGAACCGAATTCGGTGATAATGTTGGTCATGTTGCAAGGGTGTTGTGGTTTTGAAACTTCAATATATGGGAGGCAAGTTCATGGATATGTGATTAAGAATGGTTTGCTAAGTAATGGAGCTGTTCAGAACTCAATCTTGGGAATGTATGCTAAATCAGGTACCACTGAAGAAGTCGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

5.55

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 49 - 95 1.9e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019375)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981
rosa_laevigata RLG00000019007
rosa_rugosa Rorug02G0278900
rosa_samantha Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 2 cut(s) 105, 115
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 79, 400
AgsI TTSAA 3 cut(s) 220, 293, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
ApoI RAATTY 1 cut(s) 247
Asp718I GGTACC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 265
BanI GGYRCC 1 cut(s) 398
BccI CCATC 2 cut(s) 40, 226
BcnI CCSGG 1 cut(s) 175
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 243, 400
BmrFI CCNGG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 67, 237
BshNI GGYRCC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 105, 115
BspLI GGNNCC 2 cut(s) 243, 400
BspT107I GGYRCC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 67, 237
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 67, 237
BtsIMutI CAGTG 1 cut(s) 402
Csp6I GTAC 2 cut(s) 78, 399
CviAII CATG 2 cut(s) 268, 320
CviJI RGCY 1 cut(s) 359
CviKI_1 RGCY 1 cut(s) 359
CviQI GTAC 2 cut(s) 78, 399
DdeI CTNAG 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 247
FaeI CATG 2 cut(s) 271, 323
FaiI YATR 9 cut(s) 15, 83, 180, 269, 304, 306, 321, 327, 387
FatI CATG 2 cut(s) 267, 319
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 2 cut(s) 74, 244
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 271, 323
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 4 cut(s) 45, 159, 187, 366
HpyAV CCTTC 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 4, 17, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 271, 323
KpnI GGTACC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 3 cut(s) 3, 187, 381
MaeII ACGT 1 cut(s) 6
MboII GAAGA 1 cut(s) 419
MluCI AATT 3 cut(s) 39, 236, 247
MnlI CCTC 3 cut(s) 82, 222, 303
MseI TTAA 2 cut(s) 138, 333
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 175
NlaIII CATG 2 cut(s) 271, 323
NlaIV GGNNCC 2 cut(s) 243, 400
PkrI GCNGC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 243, 400
RsaI GTAC 2 cut(s) 79, 400
RsaNI GTAC 2 cut(s) 78, 399
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 138, 333
SatI GCNGC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 175
SetI ASST 4 cut(s) 9, 93, 361, 400
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 3 cut(s) 39, 236, 247
SsiI CCGC 2 cut(s) 105, 115
StyD4I CCNGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 164, 414
TasI AATT 3 cut(s) 39, 236, 247
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 108
Tru1I TTAA 2 cut(s) 138, 333
Tru9I TTAA 2 cut(s) 138, 333
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 4 cut(s) 17, 144, 237, 308
TspRI CASTG 1 cut(s) 409
XapI RAATTY 1 cut(s) 247
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.