Rh2AG332400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019375
Physical Location & Seq
Forward (+)
48067508 .. 48067825
318 bp
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UTR
Exon/CDS
Intron
Rh2AG332400.1

Sequence Viewer

Length: 318 bp
ATGATTTCCGGGTATGTTTCTGAAGGAAATGTTGCTTCTGGGTTTAGTTTGTTCAATGAAATGAGGATGGAATTGGAACCGAATTCGGTGACAATGTTGGTCATGTTGCAAGGGTGTTGTGGTTTTGAAACTTCAATATATGGGAGGCAAGTTCATGGATATGTGATTAAGAATGGTTTGCTGAGTAATGGAGCTGTTCAGAACTCAATCTTGGGAATGTATGCTAAATTAGGTACCACTGAAGAAGTCGAATTCTCAGGGAACTTGATAGGGGGGATGCTGTTTCCTGGAATATTTGTATTTCATCTTATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

105

Amino Acids

11.4

Weight (kDa)

5.14

Isoelectric Point (pI)

19.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 40 6.1e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019375)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981
rosa_laevigata RLG00000019007
rosa_rugosa Rorug02G0278900
rosa_samantha Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 82, 251
AcuI CTGAAG 2 cut(s) 42, 261
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 3 cut(s) 55, 128, 135
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
ApoI RAATTY 2 cut(s) 82, 251
Asp718I GGTACC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 100
BanI GGYRCC 1 cut(s) 233
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 10, 288
BmiI GGNNCC 2 cut(s) 78, 235
BmrFI CCNGG 2 cut(s) 10, 288
BmsI GCATC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 72, 282
BseMII CTCAG 2 cut(s) 173, 270
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 9
BspCNI CTCAG 2 cut(s) 174, 269
BspLI GGNNCC 2 cut(s) 78, 235
BspT107I GGYRCC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 182, 256
BstF5I GGATG 2 cut(s) 72, 282
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 8, 286
BtsCI GGATG 2 cut(s) 72, 282
BtsIMutI CAGTG 1 cut(s) 237
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 103, 155
CviJI RGCY 1 cut(s) 194
CviKI_1 RGCY 1 cut(s) 194
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 182, 256
Eco57I CTGAAG 2 cut(s) 42, 261
EcoRI GAATTC 2 cut(s) 82, 251
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 106, 158
FaiI YATR 8 cut(s) 15, 104, 139, 141, 156, 162, 222, 311
FatI CATG 2 cut(s) 102, 154
FokI GGATG 2 cut(s) 79, 289
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 106, 158
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 22, 201
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 182, 256
Hsp92II CATG 2 cut(s) 106, 158
KpnI GGTACC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 22, 24, 243, 273, 300
LweI GCATC 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 1 cut(s) 254
MluCI AATT 4 cut(s) 71, 82, 227, 251
MnlI CCTC 2 cut(s) 57, 138
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 10, 288
MvaI CCWGG 1 cut(s) 288
NciI CCSGG 1 cut(s) 10
NlaIII CATG 2 cut(s) 106, 158
NlaIV GGNNCC 2 cut(s) 78, 235
NmuCI GTSAC 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 78, 235
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 10, 288
SetI ASST 2 cut(s) 196, 235
SfaNI GCATC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 4 cut(s) 71, 82, 227, 251
SspI AATATT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 8, 286
TaqI TCGA 1 cut(s) 249
TasI AATT 4 cut(s) 71, 82, 227, 251
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 72, 143, 293
TspRI CASTG 1 cut(s) 244
XapI RAATTY 2 cut(s) 82, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.