Rh2AG332100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019375
Physical Location & Seq
Forward (+)
48009685 .. 48010146
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG332100.1

Sequence Viewer

Length: 462 bp
ATGGTTCATTCTTTGGCAATTCAGATGGGTTTTGGATTGAATGTGTATTTTGGCAGTACTATGATTGAGGTGTGTGTGAAATGCGGCAATCTCCGCAAGTTGTTTGATGAAATGCTTAACAGAGATTTAGTTTCTCGGACTTCGATGGTTTCCGGGTATGTTTCTGAAGGAAATGTTGCTTTTGGGTTTAGTTTGTTCAATGAAATGAGGATGGAATTGGAACCGAATTCGGTGACAATGTTGGTCATGTTGCAAGGGTGTTGTGGTTTTGAAACTTCAATATATGGGAGGCAAGTTCATGGTTATGTGATTAAGAATGATTTGCCAAGTAATGGAGCTGTTCAGAACTCAATCTTGGGAATGTATGCTAAATTAGGTACCACTGAAGAAGTCGAATTCTCAGGGAACTTGATAGGAGGGATGCTGTTTCCTGGAATATTTGTATTTCATCTTATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

5.47

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 42 - 88 3.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019375)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981
rosa_laevigata RLG00000019007
rosa_rugosa Rorug02G0278900
rosa_samantha Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 2 cut(s) 84, 94
AcsI RAATTY 2 cut(s) 226, 395
AcuI CTGAAG 2 cut(s) 186, 405
AfaI GTAC 2 cut(s) 58, 379
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 4 cut(s) 40, 199, 272, 279
AjnI CCWGG 1 cut(s) 430
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
ApoI RAATTY 2 cut(s) 226, 395
Asp718I GGTACC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 377
BccI CCATC 3 cut(s) 19, 139, 205
BciT130I CCWGG 1 cut(s) 432
BcnI CCSGG 1 cut(s) 154
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 154, 432
BmiI GGNNCC 2 cut(s) 222, 379
BmrFI CCNGG 2 cut(s) 154, 432
BmsI GCATC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 216, 426
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 332
BspACI CCGC 2 cut(s) 84, 94
BspCNI CTCAG 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 222, 379
BspT107I GGYRCC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 400
BstF5I GGATG 2 cut(s) 216, 426
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 152, 430
BtsCI GGATG 2 cut(s) 216, 426
BtsIMutI CAGTG 1 cut(s) 381
Csp6I GTAC 2 cut(s) 57, 378
CviAII CATG 2 cut(s) 247, 299
CviJI RGCY 1 cut(s) 338
CviKI_1 RGCY 1 cut(s) 338
CviQI GTAC 2 cut(s) 57, 378
DdeI CTNAG 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 186, 405
EcoRI GAATTC 2 cut(s) 226, 395
EcoRII CCWGG 1 cut(s) 430
FaeI CATG 2 cut(s) 250, 302
FaiI YATR 9 cut(s) 62, 159, 248, 283, 285, 300, 306, 366, 455
FatI CATG 2 cut(s) 246, 298
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 223, 433
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 250, 302
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 24, 138, 166, 345
HpyAV CCTTC 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 400
Hsp92II CATG 2 cut(s) 250, 302
KpnI GGTACC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 4 cut(s) 166, 387, 417, 444
LweI GCATC 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 1 cut(s) 398
MluCI AATT 5 cut(s) 18, 215, 226, 371, 395
MnlI CCTC 4 cut(s) 61, 201, 282, 410
MseI TTAA 2 cut(s) 117, 312
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 154, 432
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 154
NlaIII CATG 2 cut(s) 250, 302
NlaIV GGNNCC 2 cut(s) 222, 379
NmuCI GTSAC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 222, 379
RsaI GTAC 2 cut(s) 58, 379
RsaNI GTAC 2 cut(s) 57, 378
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 117, 312
SatI GCNGC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 154, 432
SetI ASST 3 cut(s) 72, 340, 379
SfaNI GCATC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 5 cut(s) 18, 215, 226, 371, 395
SsiI CCGC 2 cut(s) 84, 94
SspI AATATT 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 152, 430
TaqI TCGA 2 cut(s) 143, 393
TasI AATT 5 cut(s) 18, 215, 226, 371, 395
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 117, 312
Tru9I TTAA 2 cut(s) 117, 312
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 123, 216, 287, 437
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 332
XapI RAATTY 2 cut(s) 226, 395
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.