RchiOBHm_Chr2g0130981

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019375
Physical Location & Seq
Forward (+)
47049861 .. 47050285
425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50236

Sequence Viewer

Length: 357 bp
ATGCGCGAGTTGGGTATATGCAGGAATGGTTCATTCTATTGCAATTCAAATGGGTTTTGGACTGACGTGTATTTTGGCAATACTATGATTGAGGTATATGTGAAATGCGGCAATCTCAGTTACGCCCGTAAGTTGTTTGATGAAATACTTAACAGAGATTTAGTTTCTTGGGCTTCGATGATTTCCGGGTATGTTTATGAAGGAAATGTTACTTCTGGCTTTTGTTTGCTCAATGAAATGAGGATGGGATTGGACCCGAATTCGGTGACAATGTTGGTCATGTTGCAAGGGTGTTGTGGTTTTGAAACGTCAATATATGGGAGGCAAGTTGATGGATATGTGATTAAGAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

4.96

Isoelectric Point (pI)

8.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 53 - 99 2.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019375)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0128301 RchiOBHm_Chr2g0130981
rosa_laevigata RLG00000019007
rosa_rugosa Rorug02G0278900
rosa_samantha Rh2AG332100 Rh2AG332400 Rh2BG340400 Rh2CG319300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 6
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 48, 305
AjiI CACGTC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 253
BccI CCATC 2 cut(s) 238, 326
BcnI CCSGG 1 cut(s) 187
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 262
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 185
BstUI CGCG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 249
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 1 cut(s) 280
CviJI RGCY 2 cut(s) 173, 219
CviKI_1 RGCY 2 cut(s) 173, 219
DdeI CTNAG 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 259
FaeI CATG 1 cut(s) 283
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 109
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 194
HpyCH4IV ACGT 2 cut(s) 66, 308
HpyCH4V TGCA 3 cut(s) 21, 42, 286
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 2 cut(s) 66, 308
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 7, 199, 201
MaeII ACGT 2 cut(s) 66, 308
MaeIII GTNAC 3 cut(s) 119, 208, 265
MluCI AATT 2 cut(s) 43, 259
MnlI CCTC 3 cut(s) 85, 234, 315
MseI TTAA 2 cut(s) 150, 345
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 6
NciI CCSGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 150, 345
SatI GCNGC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 187
SetI ASST 3 cut(s) 69, 96, 311
SinI GGWCC 1 cut(s) 253
Sse9I AATT 2 cut(s) 43, 259
SsiI CCGC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 185
TaiI ACGT 2 cut(s) 69, 311
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 43, 259
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 150, 345
Tru9I TTAA 2 cut(s) 150, 345
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 21, 156, 213, 249
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.