Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018965

Physical Location & Seq

Genomic Coordinates Forward (+)

59710245 .. 59712746

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGGATTCCTCTTCTGGTAACCACAAAACTGAAAAGGGAGGAACCTTGACTTCAAGTTTTCCTGCTAATGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGCAAGCGGCTAGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGATGACTTGAGATCAGTATTGATTGACGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGGCCTTGCTCTGTTGACAAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACACGACTTGGGTCAAGTGTTGCAGCAGAAGGTTTTTCTCTGTTTAGTCCAACTGATAACTATGACAACCCTCAAAGAGATTTATCTTCCCGTGGATTTAGTTCTCCGTTAACTGTAGAAGAGAGGCAGAAGGTCTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

5.42

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	46 - 101	1.3e-06	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142251 RchiOBHm_Chr7g0238111
rosa_multiflora	Rmu_sc0000363.1_g000008 Rmu_sc0010235.1_g000006
rosa_samantha	Rh1BG061400 Rh4BG089600 Rh4DG164700 Rh7AG465800
rosa_wichuraiana	Rw0G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	103, 226
AfiI	CCNNNNNNNGG	2 cut(s)	71, 170
AgsI	TTSAA	2 cut(s)	57, 247
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	2 cut(s)	125, 342
BlsI	GCNGC	2 cut(s)	126, 343
BmiI	GGNNCC	2 cut(s)	46, 226
BmtI	GCTAGC	1 cut(s)	131
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 170
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	71, 170
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	71, 170
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	206, 278
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	46, 226
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	2 cut(s)	206, 278
Bst4CI	ACNGT	3 cut(s)	224, 292, 433
Bst6I	CTCTTC	2 cut(s)	19, 432
BstC8I	GCNNGC	2 cut(s)	122, 129
BstDEI	CTNAG	2 cut(s)	254, 314
BstDSI	CCRYGG	1 cut(s)	409
BstEII	GGTNACC	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	209, 281
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	206, 278
BstPAI	GACNNNNGTC	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	122, 129
CaiI	CAGNNNCTG	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	102, 225
CviJI	RGCY	4 cut(s)	127, 241, 253, 259
CviKI_1	RGCY	4 cut(s)	127, 241, 253, 259
CviQI	GTAC	2 cut(s)	102, 225
DdeI	CTNAG	2 cut(s)	254, 314
DpnI	GATC	2 cut(s)	208, 280
DpnII	GATC	2 cut(s)	206, 278
Eam1104I	CTCTTC	2 cut(s)	19, 432
EarI	CTCTTC	2 cut(s)	19, 432
Eco147I	AGGCCT	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	20
FaiI	YATR	7 cut(s)	80, 193, 195, 235, 284, 296, 381
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	125, 342
Fsp4HI	GCNGC	2 cut(s)	125, 342
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	125, 342
HaeIII	GGCC	1 cut(s)	259
HincII	GTYRAC	2 cut(s)	271, 429
HindII	GTYRAC	2 cut(s)	271, 429
HinfI	GANTC	1 cut(s)	8
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	158, 176, 271, 429
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	4 cut(s)	158, 176, 271, 429
HpyAV	CCTTC	3 cut(s)	110, 341, 442
HpyCH4III	ACNGT	3 cut(s)	224, 292, 433
HpyCH4V	TGCA	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	254, 314
KpnI	GGTACC	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	206, 278
LpnPI	CCDG	6 cut(s)	3, 78, 90, 177, 192, 235
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	208, 280
MboI	GATC	2 cut(s)	206, 278
MboII	GAAGA	4 cut(s)	6, 298, 396, 449
MflI	RGATCY	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	4 cut(s)	22, 35, 399, 435
MseI	TTAA	3 cut(s)	149, 308, 428
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	206, 278
NheI	GCTAGC	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	46, 226
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	126, 343
PshAI	GACNNNNGTC	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	46, 226
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	2 cut(s)	103, 226
RsaNI	GTAC	2 cut(s)	102, 225
SaqAI	TTAA	3 cut(s)	149, 308, 428
SatI	GCNGC	2 cut(s)	125, 342
Sau3AI	GATC	2 cut(s)	206, 278
SetI	ASST	4 cut(s)	50, 175, 352, 453
SfcI	CTRYAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	224, 292, 433
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	149, 308, 428
Tru9I	TTAA	3 cut(s)	149, 308, 428
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	180, 299
TspGWI	ACGGA	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	168
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.