Rh7AG465800
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018965
Physical Location & Seq
Reverse (-)
64259060 .. 64259653
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG465800.1

Sequence Viewer

Length: 384 bp
ATGTTTGGACGAGTTGTAAATGGCACTGGTGAGACTGAAGGCAAGCGGCTAGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTAATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACGAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACACGACTTGGGTCAAGTGTTGCAGCAGAAGGTTTTTCTCTGTTTAGTCCAACTGGTGACTATGACAGCCCTCGAAGAGATTTATCTTCCCATGGATTTAGTTCTCTGTTAGCTGTAGAAGAGAGGCAGAAGGTCTTTGTCTGA

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

5.14

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 20 - 70 1.1e-06 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018965)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0142251 RchiOBHm_Chr7g0238111
rosa_multiflora Rmu_sc0000363.1_g000008 Rmu_sc0010235.1_g000006
rosa_samantha Rh1BG061400 Rh4BG089600 Rh4DG164700 Rh7AG465800
rosa_wichuraiana Rw0G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 1 cut(s) 46
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 263
AseI ATTAAT 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 41, 308
AsuNHI GCTAGC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 47, 264
BlsI GCNGC 2 cut(s) 48, 265
BmiI GGNNCC 1 cut(s) 148
BmtI GCTAGC 1 cut(s) 53
BoxI GACNNNNGTC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 31, 298
BseDI CCNNGG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 31, 298
BseXI GCAGC 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 128, 200
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 31, 298
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 128, 200
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 310, 354
BstC8I GCNNGC 2 cut(s) 44, 51
BstDEI CTNAG 2 cut(s) 176, 236
BstDSI CCRYGG 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 90
BstKTI GATC 2 cut(s) 131, 203
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 128, 200
BstPAI GACNNNNGTC 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 44, 51
CaiI CAGNNNCTG 1 cut(s) 107
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 332
CviJI RGCY 5 cut(s) 49, 163, 175, 309, 353
CviKI_1 RGCY 5 cut(s) 49, 163, 175, 309, 353
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 2 cut(s) 176, 236
DpnI GATC 2 cut(s) 130, 202
DpnII GATC 2 cut(s) 128, 200
Eam1104I CTCTTC 2 cut(s) 310, 354
EarI CTCTTC 2 cut(s) 310, 354
Eco130I CCWWGG 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 1 cut(s) 335
FaiI YATR 7 cut(s) 115, 117, 157, 206, 218, 303, 333
FatI CATG 1 cut(s) 331
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 47, 264
Fsp4HI GCNGC 2 cut(s) 47, 264
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 47, 264
Hin1II CATG 1 cut(s) 335
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HphI GGTGA 2 cut(s) 41, 308
Hpy166II GTNNAC 3 cut(s) 80, 98, 193
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 3 cut(s) 80, 98, 193
HpyAV CCTTC 3 cut(s) 32, 263, 364
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 176, 236
Hsp92II CATG 1 cut(s) 335
KpnI GGTACC 1 cut(s) 150
Kzo9I GATC 2 cut(s) 128, 200
LpnPI CCDG 5 cut(s) 12, 99, 114, 157, 279
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 130, 202
MboI GATC 2 cut(s) 128, 200
MboII GAAGA 4 cut(s) 220, 318, 327, 371
MflI RGATCY 1 cut(s) 200
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 4 cut(s) 112, 190, 321, 357
MseI TTAA 3 cut(s) 71, 137, 230
NcoI CCATGG 1 cut(s) 331
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 128, 200
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 48, 265
PshAI GACNNNNGTC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 71, 137, 230
SatI GCNGC 2 cut(s) 47, 264
Sau3AI GATC 2 cut(s) 128, 200
SetI ASST 5 cut(s) 97, 184, 274, 355, 375
SfcI CTRYAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 313
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 71, 137, 230
Tru9I TTAA 3 cut(s) 71, 137, 230
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 102, 221
TspRI CASTG 1 cut(s) 31
VspI ATTAAT 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 90
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.