Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0018965

Physical Location & Seq

Genomic Coordinates Reverse (-)

15420627 .. 15421298

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGGATTCCTCTTCTGGTAACCACAAAACTGAAAAGGGAGGAACCTTGACTTCAAGTGTTCCTGCTAATGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGCAAGCGGCTCGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTGATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACGAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACACGACTTGGGTCAAGTGTTGCAGCAGAAGGTTTTTCTCTGTTTAGTCCAACTGGTAACTATGACAGCCCTCGAAGAGATTTATCTTCTCGTGGATTTAGTTCTCCGTTAACTGTAGAAGAGAGGCAGAAGGTCTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

5.45

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	46 - 96	1.9e-06	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142251 RchiOBHm_Chr7g0238111
rosa_multiflora	Rmu_sc0000363.1_g000008 Rmu_sc0010235.1_g000006
rosa_samantha	Rh1BG061400 Rh4BG089600 Rh4DG164700 Rh7AG465800
rosa_wichuraiana	Rw0G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	131
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	103, 226
AfiI	CCNNNNNNNGG	2 cut(s)	71, 170
AgsI	TTSAA	2 cut(s)	57, 247
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	2 cut(s)	125, 342
BlsI	GCNGC	2 cut(s)	126, 343
BmiI	GGNNCC	2 cut(s)	46, 226
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 170
Bse1I	ACTGG	2 cut(s)	109, 376
BseLI	CCNNNNNNNGG	2 cut(s)	71, 170
BseNI	ACTGG	2 cut(s)	109, 376
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	71, 170
BsmAI	GTCTC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	206, 278
BspACI	CCGC	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	46, 226
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	109, 376
BssMI	GATC	2 cut(s)	206, 278
BssSI	CACGAG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	292, 433
Bst6I	CTCTTC	3 cut(s)	19, 388, 432
BstC8I	GCNNGC	2 cut(s)	122, 129
BstDEI	CTNAG	2 cut(s)	254, 314
BstEII	GGTNACC	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	209, 281
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	206, 278
BstPAI	GACNNNNGTC	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	122, 129
CaiI	CAGNNNCTG	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	102, 225
CviJI	RGCY	4 cut(s)	127, 241, 253, 387
CviKI_1	RGCY	4 cut(s)	127, 241, 253, 387
CviQI	GTAC	2 cut(s)	102, 225
DdeI	CTNAG	2 cut(s)	254, 314
DpnI	GATC	2 cut(s)	208, 280
DpnII	GATC	2 cut(s)	206, 278
Eam1104I	CTCTTC	3 cut(s)	19, 388, 432
EarI	CTCTTC	3 cut(s)	19, 388, 432
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	20
FaiI	YATR	7 cut(s)	80, 193, 195, 235, 284, 296, 381
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	125, 342
Fsp4HI	GCNGC	2 cut(s)	125, 342
GluI	GCNGC	2 cut(s)	125, 342
HincII	GTYRAC	2 cut(s)	271, 429
HindII	GTYRAC	2 cut(s)	271, 429
HinfI	GANTC	1 cut(s)	8
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	158, 176, 271, 429
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	4 cut(s)	158, 176, 271, 429
HpyAV	CCTTC	3 cut(s)	110, 341, 442
HpyCH4III	ACNGT	2 cut(s)	292, 433
HpyCH4V	TGCA	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	254, 314
KpnI	GGTACC	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	206, 278
LpnPI	CCDG	7 cut(s)	3, 78, 90, 177, 192, 235, 357
Lsp1109I	GCAGC	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	20, 374
MalI	GATC	2 cut(s)	208, 280
MboI	GATC	2 cut(s)	206, 278
MboII	GAAGA	5 cut(s)	6, 298, 396, 405, 449
MflI	RGATCY	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	22, 35, 190, 268, 399, 435
MseI	TTAA	3 cut(s)	149, 308, 428
MvnI	CGCG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	206, 278
NlaIV	GGNNCC	2 cut(s)	46, 226
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	126, 343
PshAI	GACNNNNGTC	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	46, 226
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	2 cut(s)	103, 226
RsaNI	GTAC	2 cut(s)	102, 225
SaqAI	TTAA	3 cut(s)	149, 308, 428
SatI	GCNGC	2 cut(s)	125, 342
Sau3AI	GATC	2 cut(s)	206, 278
SetI	ASST	5 cut(s)	50, 175, 262, 352, 453
SfcI	CTRYAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SsiI	CCGC	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	292, 433
TaqI	TCGA	1 cut(s)	391
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	149, 308, 428
Tru9I	TTAA	3 cut(s)	149, 308, 428
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	180, 299
TspGWI	ACGGA	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.