Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018965

Physical Location & Seq

Genomic Coordinates Reverse (-)

63461854 .. 63465149

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGGATTCCTCTACTGGTAACCACAAAACTGAAAAGGGAGGAACCTCGACTTCAAGTGTTCCTGCTAGTGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGCAAGCGGCTAGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTGATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACAAGGTTGATTTCCTAGTCTCCCCCTACAAGTTATATACCAGTTGGATTGAATGTCTGGTATCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

5.04

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	46 - 94	1.2e-06	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0142251 RchiOBHm_Chr7g0238111
rosa_multiflora	Rmu_sc0000363.1_g000008 Rmu_sc0010235.1_g000006
rosa_samantha	Rh1BG061400 Rh4BG089600 Rh4DG164700 Rh7AG465800
rosa_wichuraiana	Rw0G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	103, 226
AfiI	CCNNNNNNNGG	2 cut(s)	71, 170
AgsI	TTSAA	3 cut(s)	57, 247, 323
Alw26I	GTCTC	2 cut(s)	104, 295
AlwNI	CAGNNNCTG	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	224
BccI	CCATC	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	104, 295
BfaI	CTAG	3 cut(s)	69, 128, 287
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	46, 226
BmtI	GCTAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 170
Bse1I	ACTGG	3 cut(s)	22, 109, 312
BseLI	CCNNNNNNNGG	2 cut(s)	71, 170
BseNI	ACTGG	3 cut(s)	22, 109, 312
BshNI	GGYRCC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	71, 170
BsmAI	GTCTC	2 cut(s)	104, 295
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	46, 226
BspOI	GCTAGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	22, 109, 312
BssMI	GATC	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	122, 129
BstDEI	CTNAG	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	2 cut(s)	104, 295
BstMBI	GATC	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	122, 129
CaiI	CAGNNNCTG	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	102, 225
CviJI	RGCY	3 cut(s)	127, 241, 253
CviKI_1	RGCY	3 cut(s)	127, 241, 253
CviQI	GTAC	2 cut(s)	102, 225
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	20
FaiI	YATR	6 cut(s)	80, 193, 195, 235, 307, 309
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	3 cut(s)	69, 128, 287
GluI	GCNGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	158, 176, 271
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	3 cut(s)	158, 176, 271
HpyAV	CCTTC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	254
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	3, 78, 90, 177, 192, 235, 314, 325
MaeI	CTAG	3 cut(s)	69, 128, 287
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	4 cut(s)	22, 35, 58, 190
MseI	TTAA	1 cut(s)	149
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	206
NheI	GCTAGC	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	46, 226
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	126
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	46, 226
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	103, 226
RsaNI	GTAC	2 cut(s)	102, 225
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	206
SetI	ASST	4 cut(s)	50, 175, 262, 279
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	3 cut(s)	69, 128, 287
TaqI	TCGA	1 cut(s)	50
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	168
XspI	CTAG	3 cut(s)	69, 128, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.