Rw0G022420
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01043
OG0018965
Physical Location & Seq
Forward (+)
8870 .. 9431
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022420.1

Sequence Viewer

Length: 348 bp
ATGATGGATTCCTCTTCTGGTAACCACAAAACTGAAAAGGGAGGAACCTTGACTTCAAGTTTTCCTGCTAATGGGGATATGTTTGGACGAGTTGTAAATGGTACTGGTGAGACTGAAGGCAAGCGGCTAGCGTTTTTAGTGGAGTGGTTAAATAGTTTACTTCCTGATTTAGGTTTACCAGAAACTGCTTCATATGAGGACTTGAGATCAGTATTGATTGATGGTACCATTTTATGTAGGCTATTGAACAGGCTTAGACCTTGTTCTGTTGACGAGGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACACGACTTGGGTCAAGTGTTGCAGCATAA

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

5.32

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 46 - 95 1.2e-06 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018965)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0142251 RchiOBHm_Chr7g0238111
rosa_multiflora Rmu_sc0000363.1_g000008 Rmu_sc0010235.1_g000006
rosa_samantha Rh1BG061400 Rh4BG089600 Rh4DG164700 Rh7AG465800
rosa_wichuraiana Rw0G022420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 103, 226
AfiI CCNNNNNNNGG 2 cut(s) 71, 170
AgsI TTSAA 2 cut(s) 57, 247
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 341
Asp718I GGTACC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 119
AsuNHI GCTAGC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 293
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 125, 342
BlsI GCNGC 2 cut(s) 126, 343
BmiI GGNNCC 2 cut(s) 46, 226
BmtI GCTAGC 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 170
Bse1I ACTGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 71, 170
BseNI ACTGG 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 71, 170
BsmAI GTCTC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 206, 278
BspACI CCGC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 46, 226
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 206, 278
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 122, 129
BstDEI CTNAG 2 cut(s) 254, 314
BstEII GGTNACC 1 cut(s) 20
BstENI CCTNNNNNAGG 1 cut(s) 168
BstKTI GATC 2 cut(s) 209, 281
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 206, 278
BstPAI GACNNNNGTC 1 cut(s) 328
BstPI GGTNACC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 122, 129
CaiI CAGNNNCTG 1 cut(s) 185
Csp6I GTAC 2 cut(s) 102, 225
CviJI RGCY 3 cut(s) 127, 241, 253
CviKI_1 RGCY 3 cut(s) 127, 241, 253
CviQI GTAC 2 cut(s) 102, 225
DdeI CTNAG 2 cut(s) 254, 314
DpnI GATC 2 cut(s) 208, 280
DpnII GATC 2 cut(s) 206, 278
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 135
Eco91I GGTNACC 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 20
FaiI YATR 7 cut(s) 80, 193, 195, 235, 284, 296, 346
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 125, 342
Fsp4HI GCNGC 2 cut(s) 125, 342
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 125, 342
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 158, 176, 271
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 3 cut(s) 158, 176, 271
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 254, 314
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 206, 278
LpnPI CCDG 6 cut(s) 3, 78, 90, 177, 192, 235
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 208, 280
MboI GATC 2 cut(s) 206, 278
MboII GAAGA 2 cut(s) 6, 298
MflI RGATCY 1 cut(s) 278
MnlI CCTC 4 cut(s) 22, 35, 190, 268
MseI TTAA 2 cut(s) 149, 308
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 206, 278
NheI GCTAGC 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 46, 226
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 126, 343
PshAI GACNNNNGTC 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 46, 226
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 2 cut(s) 103, 226
RsaNI GTAC 2 cut(s) 102, 225
SaqAI TTAA 2 cut(s) 149, 308
SatI GCNGC 2 cut(s) 125, 342
Sau3AI GATC 2 cut(s) 206, 278
SetI ASST 3 cut(s) 50, 175, 262
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 292
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 149, 308
Tru9I TTAA 2 cut(s) 149, 308
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 180, 299
XagI CCTNNNNNAGG 1 cut(s) 168
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.