RchiOBHm_Chr2g0163051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019379
Physical Location & Seq
Forward (+)
78706634 .. 78707545
912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53125

Sequence Viewer

Length: 912 bp
ATGCCAACAACTATTGATGATATCCCTGACTTGGTATTGGTTGAGATCCTTTGTCGACTTCCTTGTAAATTCCTTTTTCAATGCAAATGTGTGTCCAAAAGCTGGTGTACTCTCATACAAGATCCTTATCTTAGTGGCCGGTTTATGCGTCTCCAAAGTGATCGACGGACACCAGTCGTGAGTACTGTAATTAACACCAGAGGAGAAGAATGCCTTACTACATTGTGGCCGTCGACCTGCAAGCCACTAACACGGTTGTTCAAAAAACTAATGCGTTTCTACCATTTGATCGAAAAGCCAAACGTGCCAGCTACATACAATGACCTGGTTTTGTGCTGCTCCCTTGAGTGCAGTTATCAAGGGGATTACTACATCTGCAATCCATACACAATGCAATGGGCTCGTCTACCTCCCCCTCCAAGATTCTTCCGATTTGTAGCTACGGGATTTATCTGTGATCTTCCCCACTATAACCATAAGAAAGAGGACGACCCGAAAGGAAATATCATCCAGCTCAATGCTGAGTATAGATACAAGGTTGTGAGAATAATTTCGACTGATATGTCAGCCAGTAAATTTGAAGTTCAGATGTTCTCTTCCGAGACTGGTAAATGGAAAGAATCAATTGTATCATCTCCGTGGAAATTTAGCAGTTCTGTCGTCCACCATAACATCAAGAGCTTTGCCTTCAATGGAATGCTGTATTGGATGGACATGGATAAGAGATTTCTTATTCAATTGGAGACGTTCAGTGGTGATATTGGTGATCAAAATGCATGGAGGTTCGTTCATTTTGGCCAAGTTGAAAGTCGTCAACAGTGTTGCGTAGGTATTTTTAAAGGGCGTCTGCTCATTGGAGAATACAACTTTCCTGGCGGCACTCTATCTTTTGGGGAGTTGAGTGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

303

Amino Acids

35.19

Weight (kDa)

8.33

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 1.6e-08 F-box domain
F-box-like PF12937 5 - 44 1.3e-06 F-box-like
b-prop_At3g26010-like PF24750 103 - 271 2.1e-12 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019379)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163051
rosa_multiflora Rmu_sc0003984.1_g000003 Rmu_sc0025720.1_g000001
rosa_roxburghii Rroxscaffold_2G00087590
rosa_samantha Rh2BG578700 Rh2CG548600 Rh2CG548700
rosa_wichuraiana Rw2G046880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 562
Acc36I ACCTGC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 3 cut(s) 55, 233, 406
AciI CCGC 1 cut(s) 876
AclWI GGATC 2 cut(s) 40, 116
AcoI YGGCCR 3 cut(s) 136, 227, 796
AcsI RAATTY 3 cut(s) 68, 575, 644
AcyI GRCGYC 1 cut(s) 844
AfaI GTAC 2 cut(s) 109, 184
AfiI CCNNNNNNNGG 2 cut(s) 31, 102
AgsI TTSAA 6 cut(s) 80, 262, 581, 691, 737, 806
AjnI CCWGG 2 cut(s) 324, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 5 cut(s) 102, 311, 440, 514, 681
AluI AGCT 5 cut(s) 102, 311, 440, 514, 681
Alw26I GTCTC 3 cut(s) 155, 596, 737
AlwI GGATC 2 cut(s) 40, 116
AoxI GGCC 3 cut(s) 136, 227, 796
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 3 cut(s) 68, 575, 644
Asp700I GAANNNNTTC 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 767, 776
BalI TGGCCA 1 cut(s) 798
BanII GRGCYC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 703
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 4 cut(s) 383, 417, 640, 674
BciT130I CCWGG 2 cut(s) 326, 873
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 3 cut(s) 155, 596, 737
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 337, 877
BlsI GCNGC 2 cut(s) 338, 878
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 326, 873
BmrFI CCNGG 2 cut(s) 326, 873
BoxI GACNNNNGTC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 844
BsaJI CCNNGG 1 cut(s) 638
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 102
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 3 cut(s) 173, 570, 610
Bse3DI GCAATG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 326, 873
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 2 cut(s) 507, 714
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 31, 102
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 3 cut(s) 173, 570, 610
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 370
BshFI GGCC 3 cut(s) 138, 229, 798
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 31, 102
BsmAI GTCTC 3 cut(s) 155, 596, 737
BsmBI CGTCTC 2 cut(s) 155, 737
BsmI GAATGC 2 cut(s) 215, 702
BsnI GGCC 3 cut(s) 138, 229, 798
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 6 cut(s) 45, 121, 160, 288, 457, 766
BspACI CCGC 1 cut(s) 876
BspANI GGCC 3 cut(s) 138, 229, 798
BspCNI CTCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 40, 116
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 3 cut(s) 173, 570, 610
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 6 cut(s) 45, 121, 160, 288, 457, 766
BssNI GRCGYC 1 cut(s) 844
Bst2UI CCWGG 2 cut(s) 326, 873
Bst4CI ACNGT 3 cut(s) 187, 255, 819
Bst6I CTCTTC 1 cut(s) 601
BstACI GRCGYC 1 cut(s) 844
BstC8I GCNNGC 2 cut(s) 242, 309
BstDEI CTNAG 2 cut(s) 131, 522
BstDSI CCRYGG 1 cut(s) 638
BstF5I GGATG 2 cut(s) 507, 714
BstKTI GATC 6 cut(s) 48, 124, 163, 291, 460, 769
BstMAI GTCTC 3 cut(s) 155, 596, 737
BstMBI GATC 6 cut(s) 45, 121, 160, 288, 457, 766
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 326, 873
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 324, 871
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 45, 121
BstYI RGATCY 2 cut(s) 45, 121
BsuRI GGCC 3 cut(s) 138, 229, 798
BtgI CCRYGG 1 cut(s) 638
BtsCI GGATG 2 cut(s) 507, 714
BtsIMutI CAGTG 2 cut(s) 757, 824
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 242, 309
Cfr10I RCCGGY 1 cut(s) 138
CseI GACGC 2 cut(s) 137, 833
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 2 cut(s) 108, 183
CviAII CATG 2 cut(s) 715, 777
CviQI GTAC 2 cut(s) 108, 183
DdeI CTNAG 2 cut(s) 131, 522
DpnI GATC 6 cut(s) 47, 123, 162, 290, 459, 768
DpnII GATC 6 cut(s) 45, 121, 160, 288, 457, 766
DraI TTTAAA 1 cut(s) 838
DrdI GACNNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 3 cut(s) 136, 227, 796
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 324, 871
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 403
Esp3I CGTCTC 2 cut(s) 155, 737
FaeI CATG 2 cut(s) 718, 780
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 2 cut(s) 714, 776
FbaI TGATCA 1 cut(s) 766
FblI GTMKAC 3 cut(s) 55, 233, 406
Fnu4HI GCNGC 2 cut(s) 337, 877
FokI GGATG 2 cut(s) 494, 721
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 2 cut(s) 337, 877
GluI GCNGC 2 cut(s) 337, 877
HaeIII GGCC 3 cut(s) 138, 229, 798
HapII CCGG 1 cut(s) 139
HgaI GACGC 2 cut(s) 137, 833
Hin1I GRCGYC 1 cut(s) 844
Hin1II CATG 2 cut(s) 718, 780
HincII GTYRAC 3 cut(s) 56, 234, 815
HindII GTYRAC 3 cut(s) 56, 234, 815
HinfI GANTC 2 cut(s) 423, 620
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 767, 776
Hpy166II GTNNAC 6 cut(s) 56, 108, 234, 407, 664, 815
Hpy188I TCNGA 3 cut(s) 431, 588, 601
Hpy188III TCNNGA 2 cut(s) 178, 676
Hpy8I GTNNAC 6 cut(s) 56, 108, 234, 407, 664, 815
Hpy99I CGWCG 2 cut(s) 168, 235
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 3 cut(s) 187, 255, 819
HpyCH4IV ACGT 2 cut(s) 303, 746
HpyCH4V TGCA 6 cut(s) 84, 240, 351, 378, 394, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 2 cut(s) 131, 522
HpySE526I ACGT 2 cut(s) 303, 746
Hsp92I GRCGYC 1 cut(s) 844
Hsp92II CATG 2 cut(s) 718, 780
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 6 cut(s) 45, 121, 160, 288, 457, 766
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 1 cut(s) 323
MabI ACCWGGT 1 cut(s) 324
MaeII ACGT 2 cut(s) 303, 746
MalI GATC 6 cut(s) 47, 123, 162, 290, 459, 768
MboI GATC 6 cut(s) 45, 121, 160, 288, 457, 766
MboII GAAGA 4 cut(s) 218, 418, 452, 588
MfeI CAATTG 2 cut(s) 624, 737
MflI RGATCY 2 cut(s) 45, 121
MhlI GDGCHC 1 cut(s) 403
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 7 cut(s) 68, 189, 549, 575, 624, 644, 737
MluNI TGGCCA 1 cut(s) 798
MnlI CCTC 5 cut(s) 194, 420, 426, 478, 774
Mox20I TGGCCA 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 550
MscI TGGCCA 1 cut(s) 798
MseI TTAA 2 cut(s) 192, 837
MslI CAYNNNNRTG 1 cut(s) 637
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 326, 873
MunI CAATTG 2 cut(s) 624, 737
Mva1269I GAATGC 2 cut(s) 215, 702
MvaI CCWGG 2 cut(s) 326, 873
MwoI GCNNNNNNNGC 1 cut(s) 304
NdeII GATC 6 cut(s) 45, 121, 160, 288, 457, 766
NlaIII CATG 2 cut(s) 718, 780
NsiI ATGCAT 1 cut(s) 778
PctI GAATGC 2 cut(s) 215, 702
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 2 cut(s) 423, 620
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 338, 878
PshAI GACNNNNGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 324, 871
PspGI CCWGG 2 cut(s) 324, 871
PsuI RGATCY 2 cut(s) 45, 121
RsaI GTAC 2 cut(s) 109, 184
RsaNI GTAC 2 cut(s) 108, 183
RseI CAYNNNNRTG 1 cut(s) 637
SalI GTCGAC 2 cut(s) 54, 232
SaqAI TTAA 2 cut(s) 192, 837
SatI GCNGC 2 cut(s) 337, 877
Sau3AI GATC 6 cut(s) 45, 121, 160, 288, 457, 766
ScaI AGTACT 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 326, 873
SduI GDGCHC 1 cut(s) 403
SexAI ACCWGGT 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 637
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 7 cut(s) 68, 189, 549, 575, 624, 644, 737
SsiI CCGC 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 324, 871
TaaI ACNGT 3 cut(s) 187, 255, 819
TaiI ACGT 2 cut(s) 306, 749
TaqI TCGA 5 cut(s) 55, 163, 233, 291, 554
TasI AATT 7 cut(s) 68, 189, 549, 575, 624, 644, 737
TatI WGTACW 2 cut(s) 107, 182
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 2 cut(s) 423, 620
Tru1I TTAA 2 cut(s) 192, 837
Tru9I TTAA 2 cut(s) 192, 837
TscAI CASTG 2 cut(s) 757, 824
TseI GCWGC 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 779
TspGWI ACGGA 2 cut(s) 181, 627
TspRI CASTG 2 cut(s) 757, 824
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 3 cut(s) 68, 575, 644
XmiI GTMKAC 3 cut(s) 55, 233, 406
XmnI GAANNNNTTC 1 cut(s) 550
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.