Rh2BG578700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019379
Physical Location & Seq
Forward (+)
79623207 .. 79626847
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG578700.1

Sequence Viewer

Length: 489 bp
ATGGAAAAGAAGATCCCATTGAAACGGCGAAGGGTATGGGAACAACGAGTGGATACAGGAGTTCCTAGGCTACCACATCGACGTCAACTCGCCCAGCAGACCCAGCAGGGTGTACGATGTCCAACTCTTGACCTCAGCACTTCCAAGTCCCAGCTGCCTGCCCGAGCTTCTTCTTCTAAAGTTGGCTGTATAAGTGTTGCAAACAACGCGAAAGTGAAAGTGAAAGAAAAGGTGGTTCAGAACATGGAAAAGAAGATCCCATTGAAACGGCGAAGGGGTGGCCCTTTAGTGATGGCGTTGACGGTCAACATCCAGCGTGGTCTGCTCCAAAATAAGCTCCCACGGAATCTCCGCCACCCACCACGTGTCTCGTTCCGATTGGACCTACCTCCACTCCTCTCCTCGTTTAAAGCCCCCACCCCGATTCCCATTTTCCATTTTACGAGCCTAGATCTTCTTCTCCTTCGTCGTCGACCGAGACAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

11.97

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019379)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163051
rosa_multiflora Rmu_sc0003984.1_g000003 Rmu_sc0025720.1_g000001
rosa_roxburghii Rroxscaffold_2G00087590
rosa_samantha Rh2BG578700 Rh2CG548600 Rh2CG548700
rosa_wichuraiana Rw2G046880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 472
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 352
AclWI GGATC 2 cut(s) 7, 250
AcvI CACGTG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 365
AfaI GTAC 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 2 cut(s) 22, 265
AluBI AGCT 3 cut(s) 154, 167, 337
AluI AGCT 3 cut(s) 154, 167, 337
Alw26I GTCTC 2 cut(s) 373, 472
AlwI GGATC 2 cut(s) 7, 250
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 154
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 281, 382
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 382
AvrII CCTAGG 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BbrPI CACGTG 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 41, 284
BciVI GTATCC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 373, 472
BfaI CTAG 2 cut(s) 66, 449
BfuI GTATCC 1 cut(s) 46
BglII AGATCT 1 cut(s) 451
BisI GCNGC 1 cut(s) 155
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 281, 382
Bpu10I CCTNAGC 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 65, 341
BsaXI ACNNNNNCTCC 4 cut(s) 333, 363, 378, 408
BseDI CCNNGG 2 cut(s) 65, 341
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 386, 391
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 3 cut(s) 93, 102, 150
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 373, 472
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 3 cut(s) 12, 255, 451
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 209
BspPI GGATC 2 cut(s) 7, 250
BssECI CCNNGG 2 cut(s) 65, 341
BssMI GATC 3 cut(s) 12, 255, 451
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 3 cut(s) 15, 258, 454
BstMAI GTCTC 2 cut(s) 373, 472
BstMBI GATC 3 cut(s) 12, 255, 451
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 3 cut(s) 103, 206, 322
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 3 cut(s) 12, 255, 451
BstYI RGATCY 3 cut(s) 12, 255, 451
BsuI GTATCC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 281, 382
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 244
CviJI RGCY 8 cut(s) 70, 154, 167, 186, 282, 337, 413, 447
CviKI_1 RGCY 8 cut(s) 70, 154, 167, 186, 282, 337, 413, 447
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 14, 257, 453
DpnII GATC 3 cut(s) 12, 255, 451
DraI TTTAAA 1 cut(s) 409
DraIII CACNNNGTG 1 cut(s) 365
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 382
Eco72I CACGTG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 37, 191, 245
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 2 cut(s) 66, 449
GluI GCNGC 1 cut(s) 155
GsaI CCCAGC 3 cut(s) 97, 106, 154
HaeIII GGCC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 4 cut(s) 86, 300, 307, 473
HindII GTYRAC 4 cut(s) 86, 300, 307, 473
HinfI GANTC 2 cut(s) 346, 424
Hpy166II GTNNAC 5 cut(s) 86, 113, 300, 307, 473
Hpy188I TCNGA 2 cut(s) 240, 377
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 5 cut(s) 86, 113, 300, 307, 473
Hpy99I CGWCG 3 cut(s) 84, 471, 474
HpyAV CCTTC 3 cut(s) 24, 267, 473
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 82, 364
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 206, 322
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 82, 364
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 12, 255, 451
LmnI GCTCC 2 cut(s) 330, 342
LpnPI CCDG 8 cut(s) 42, 92, 107, 116, 164, 171, 326, 467
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 2 cut(s) 66, 449
MaeII ACGT 2 cut(s) 82, 364
MalI GATC 3 cut(s) 14, 257, 453
MboI GATC 3 cut(s) 12, 255, 451
MboII GAAGA 6 cut(s) 22, 162, 165, 265, 446, 449
MflI RGATCY 3 cut(s) 12, 255, 451
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 143, 399, 407, 412
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 154
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 103, 206, 322
NdeII GATC 3 cut(s) 12, 255, 451
NlaIII CATG 1 cut(s) 247
PfeI GAWTC 2 cut(s) 346, 424
PkrI GCNGC 1 cut(s) 156
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 365
PspCI CACGTG 1 cut(s) 365
PspFI CCCAGC 3 cut(s) 93, 102, 150
PspPI GGNCC 2 cut(s) 281, 382
PsuI RGATCY 3 cut(s) 12, 255, 451
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SalI GTCGAC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 12, 255, 451
Sau96I GGNCC 2 cut(s) 281, 382
SinI GGWCC 1 cut(s) 382
SsiI CCGC 1 cut(s) 352
SspMI CTAG 2 cut(s) 66, 449
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 85, 367
TaqI TCGA 2 cut(s) 79, 472
TfiI GAWTC 2 cut(s) 346, 424
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseI GCWGC 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 2 cut(s) 66, 449
ZraI GACGTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.