Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019379

Physical Location & Seq

Genomic Coordinates Reverse (-)

9603077 .. 9606387

Gene Structure 3311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCTCTCGCCCCCAACCTCACCACCCGTCTCGACCACACCGACTTTGGCCTCTTCTTCCCGACCCGGTCTCGCCCCTTTCTCGTCCTCCCTCTCCTACGGGATTTATCTCGTGATCTTCCCCACTATAACCATAAGAAAGAGGACGACCCGAAAGGAAATATCATGCATCCGACTCCATGCGAGTATAGATACAAGGTTGTGAGAATAATTTCGACCGATATGTCGACCGGCAAATTTGAAGTTCAGATGTTCTCTTCCGAGACCGGCATATGGAAAGCATCAATTGTATCATCTCCGTCGAAATTTAGCGGTTCGTCGTCCACGCTAACATCAAGAGCTTTGCCTTTAATGGAATGCTTGTATTGGATGGACATGGATAAGAAATTTCTTATTCGGTTGGATACGTTCGGTGGTGATATTGGTGATCAACATGCATGGAGGTTCGTTCATTTTGGCCAAGTTGAAAGTAGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

159

Amino Acids

18.28

Weight (kDa)

7.83

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	64 - 154	7.1e-08	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019379)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0163051
rosa_multiflora	Rmu_sc0003984.1_g000003 Rmu_sc0025720.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087590
rosa_samantha	Rh2BG578700 Rh2CG548600 Rh2CG548700
rosa_wichuraiana	Rw2G046880

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	3 cut(s)	236, 305, 386
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	242, 467
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	35, 75, 257
AoxI	GGCC	2 cut(s)	49, 457
ApoI	RAATTY	3 cut(s)	236, 305, 386
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	13, 428, 437
BalI	TGGCCA	1 cut(s)	459
BauI	CACGAG	1 cut(s)	111
BccI	CCATC	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	35, 75, 257
BfuI	GTATCC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	178, 290
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	2 cut(s)	75, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	2 cut(s)	230, 266
BseGI	GGATG	2 cut(s)	169, 375
BseLI	CCNNNNNNNGG	1 cut(s)	273
Bsh1285I	CGRYCG	2 cut(s)	219, 231
BshFI	GGCC	2 cut(s)	51, 459
BsiEI	CGRYCG	2 cut(s)	219, 231
BsiSI	CCGG	3 cut(s)	67, 231, 267
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	3 cut(s)	35, 75, 257
BsmBI	CGTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	51, 459
Bso31I	GGTCTC	2 cut(s)	75, 257
Bsp143I	GATC	2 cut(s)	115, 427
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	51, 459
BspTNI	GGTCTC	2 cut(s)	75, 257
BsrFI	RCCGGY	2 cut(s)	230, 266
BssAI	RCCGGY	2 cut(s)	230, 266
BssMI	GATC	2 cut(s)	115, 427
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	59, 262
BstF5I	GGATG	2 cut(s)	169, 375
BstKTI	GATC	2 cut(s)	118, 430
BstMAI	GTCTC	3 cut(s)	35, 75, 257
BstMBI	GATC	2 cut(s)	115, 427
BstMCI	CGRYCG	2 cut(s)	219, 231
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	51, 459
BtsCI	GGATG	2 cut(s)	169, 375
Cfr10I	RCCGGY	2 cut(s)	230, 266
CviAII	CATG	5 cut(s)	166, 180, 376, 434, 438
CviJI	RGCY	3 cut(s)	51, 341, 459
CviKI_1	RGCY	3 cut(s)	51, 341, 459
DpnI	GATC	2 cut(s)	117, 429
DpnII	GATC	2 cut(s)	115, 427
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	59, 262
EarI	CTCTTC	2 cut(s)	59, 262
Eco31I	GGTCTC	2 cut(s)	75, 257
EcoT22I	ATGCAT	2 cut(s)	171, 439
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	5 cut(s)	169, 183, 379, 437, 441
FatI	CATG	5 cut(s)	165, 179, 375, 433, 437
FauNDI	CATATG	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	227
FokI	GGATG	2 cut(s)	156, 382
HaeIII	GGCC	2 cut(s)	51, 459
HapII	CCGG	3 cut(s)	67, 231, 267
Hin1II	CATG	5 cut(s)	169, 183, 379, 437, 441
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	3 cut(s)	67, 231, 267
HphI	GGTGA	3 cut(s)	13, 428, 437
Hpy166II	GTNNAC	2 cut(s)	228, 324
Hpy188I	TCNGA	3 cut(s)	174, 249, 262
Hpy188III	TCNNGA	4 cut(s)	32, 61, 113, 336
Hpy8I	GTNNAC	2 cut(s)	228, 324
Hpy99I	CGWCG	2 cut(s)	304, 322
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	2 cut(s)	169, 437
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	5 cut(s)	169, 183, 379, 437, 441
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	115, 427
LpnPI	CCDG	3 cut(s)	80, 244, 280
LweI	GCATC	2 cut(s)	178, 290
MaeII	ACGT	1 cut(s)	407
MalI	GATC	2 cut(s)	117, 429
MboI	GATC	2 cut(s)	115, 427
MboII	GAAGA	4 cut(s)	46, 49, 110, 249
MfeI	CAATTG	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	5 cut(s)	210, 236, 285, 305, 386
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	197, 381
MnlI	CCTC	7 cut(s)	15, 29, 62, 98, 102, 136, 435
Mox20I	TGGCCA	1 cut(s)	459
Mph1103I	ATGCAT	2 cut(s)	171, 439
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	459
MspI	CCGG	3 cut(s)	67, 231, 267
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	272
NdeII	GATC	2 cut(s)	115, 427
NlaIII	CATG	5 cut(s)	169, 183, 379, 437, 441
NsiI	ATGCAT	2 cut(s)	171, 439
NspI	RCATGY	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	115, 427
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	5 cut(s)	21, 201, 343, 410, 446
SfaNI	GCATC	2 cut(s)	178, 290
Sse9I	AATT	5 cut(s)	210, 236, 285, 305, 386
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	33, 215, 227, 302
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	5 cut(s)	210, 236, 285, 305, 386
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	67
XapI	RAATTY	3 cut(s)	236, 305, 386
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	211
Zsp2I	ATGCAT	2 cut(s)	171, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.