Rmu_sc0025720.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025720.1
OG0019379
Physical Location & Seq
Reverse (-)
2105 .. 3142
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025720.1_g000001.1.cds

Sequence Viewer

Length: 921 bp
atgcaatgggctcgtctacctccccctccaagattcttccaatttgtagctacgggatttatctgtgatcttccccactataaccataagaaagaggacgacccgaaaggaaatatcatccagctcaatgctgagtatagatacaaggttgtgagaataatttcgactgatatgtcagccagtaaatttgaagttcagatgttctcttccgagactggtaaatggaaagaatcaattacgttcagtggtgatattggtgatcaaaatgcatggaggttcgttcattttggccaagttgaaagtcgtcaacagtgttgcgtaggtatttttaaagggcgtctgctcattggagaatacaactttcctggcggcactctatcttttggggagttgagtgaagaacacatccagcttggaggagaaactcgcaaactatgtatgaaagtcatagagatggtttatctgccggacctaaaacccgacggggttacaatgaaattgatatcttttgagcctagtgaggaggatatattggatattcgtatctatccgggctaccgggaaactactagagtcattgccaagtacaatatatgtacaggaaagtggtcaaagatttttgacatgagtattgagaatgactacttctcattagcgcttccatggtggccgacaccagttcctaggctaccacatcgacgtcaactcgcccagcagacccagcagggtgtacgatgtccagcttttgacctcagcacttccaaatcccagcctgcccgagcttcttcttctaaagttggctgtggaagtgttgcaagcaacgcgaaagtgaaagtgaaagaaaaggtggttcagaacatggaaaagaagatcccattgaaacggcgaagggtatgggaacaacgcgtggatacaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

306

Amino Acids

35.08

Weight (kDa)

9.21

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019379)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163051
rosa_multiflora Rmu_sc0003984.1_g000003 Rmu_sc0025720.1_g000001
rosa_roxburghii Rroxscaffold_2G00087590
rosa_samantha Rh2BG578700 Rh2CG548600 Rh2CG548700
rosa_wichuraiana Rw2G046880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AatII GACGTC 1 cut(s) 703
AccI GTMKAC 1 cut(s) 16
AccII CGCG 2 cut(s) 824, 906
AciI CCGC 1 cut(s) 369
AclWI GGATC 1 cut(s) 865
AcoI YGGCCR 2 cut(s) 289, 668
AcsI RAATTY 1 cut(s) 185
AcyI GRCGYC 2 cut(s) 337, 700
AfaI GTAC 3 cut(s) 587, 598, 732
AfeI AGCGCT 1 cut(s) 657
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 3 cut(s) 191, 299, 880
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 5 cut(s) 50, 124, 412, 743, 782
AluI AGCT 5 cut(s) 50, 124, 412, 743, 782
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 865
Ama87I CYCGRG 1 cut(s) 777
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 2 cut(s) 289, 668
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 160
AspA2I CCTAGG 1 cut(s) 683
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 2 cut(s) 552, 560
AsuHPI GGTGA 2 cut(s) 260, 269
AvaI CYCGRG 1 cut(s) 777
AvaII GGWCC 1 cut(s) 469
AvrII CCTAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 291
BanII GRGCYC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 752
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 899
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 2 cut(s) 552, 560
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 3 cut(s) 516, 570, 684
BfoI RGCGCY 1 cut(s) 659
BfuI GTATCC 1 cut(s) 904
BisI GCNGC 1 cut(s) 370
BlnI CCTAGG 1 cut(s) 683
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 366, 552, 560
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 777
BmgT120I GGNCC 1 cut(s) 469
BmrFI CCNGG 3 cut(s) 366, 552, 560
Bpu10I CCTNAGC 1 cut(s) 752
BpuMI CCSGG 2 cut(s) 552, 560
BsaHI GRCGYC 2 cut(s) 337, 700
BsaJI CCNNGG 2 cut(s) 662, 683
Bse1I ACTGG 3 cut(s) 180, 220, 677
Bse3DI GCAATG 2 cut(s) 11, 576
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 662, 683
BseGI GGATG 2 cut(s) 117, 405
BseMI GCAATG 2 cut(s) 11, 576
BseMII CTCAG 2 cut(s) 123, 766
BseNI ACTGG 3 cut(s) 180, 220, 677
BseRI GAGGAG 2 cut(s) 432, 536
BseYI CCCAGC 3 cut(s) 711, 720, 768
Bsh1236I CGCG 2 cut(s) 824, 906
BshFI GGCC 2 cut(s) 291, 670
BsiHKCI CYCGRG 1 cut(s) 777
BsiSI CCGG 3 cut(s) 467, 551, 559
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 291, 670
BsoBI CYCGRG 1 cut(s) 777
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 3 cut(s) 67, 259, 870
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 1 cut(s) 369
BspANI GGCC 2 cut(s) 291, 670
BspCNI CTCAG 2 cut(s) 124, 765
BspFNI CGCG 2 cut(s) 824, 906
BspPI GGATC 1 cut(s) 865
BsrDI GCAATG 2 cut(s) 11, 576
BsrGI TGTACA 1 cut(s) 596
BsrI ACTGG 3 cut(s) 180, 220, 677
BssECI CCNNGG 2 cut(s) 662, 683
BssMI GATC 3 cut(s) 67, 259, 870
BssNI GRCGYC 2 cut(s) 337, 700
BssT1I CCWWGG 2 cut(s) 662, 683
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 2 cut(s) 337, 700
BstAUI TGTACA 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 774, 817
BstDEI CTNAG 2 cut(s) 132, 752
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 2 cut(s) 117, 405
BstFNI CGCG 2 cut(s) 824, 906
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 3 cut(s) 70, 262, 873
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 67, 259, 870
BstMWI GCNNNNNNNGC 2 cut(s) 721, 821
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 3 cut(s) 364, 550, 558
BstUI CGCG 2 cut(s) 824, 906
BstX2I RGATCY 1 cut(s) 870
BstYI RGATCY 1 cut(s) 870
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 2 cut(s) 291, 670
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 2 cut(s) 117, 405
BtsIMutI CAGTG 2 cut(s) 250, 317
Cac8I GCNNGC 2 cut(s) 774, 817
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 326
Csp6I GTAC 3 cut(s) 586, 597, 731
CviAII CATG 4 cut(s) 270, 625, 663, 859
CviQI GTAC 3 cut(s) 586, 597, 731
DdeI CTNAG 2 cut(s) 132, 752
DpnI GATC 3 cut(s) 69, 261, 872
DpnII GATC 3 cut(s) 67, 259, 870
DraI TTTAAA 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 289, 668
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 662, 683
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 777
EcoRII CCWGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 662, 683
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 662, 683
FaeI CATG 4 cut(s) 273, 628, 666, 862
FatI CATG 4 cut(s) 269, 624, 662, 858
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 370
FokI GGATG 2 cut(s) 104, 392
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 3 cut(s) 516, 570, 684
GlaI GCGC 1 cut(s) 657
GluI GCNGC 1 cut(s) 370
GsaI CCCAGC 3 cut(s) 715, 724, 772
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 291, 670
HapII CCGG 3 cut(s) 467, 551, 559
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 2 cut(s) 337, 700
Hin1II CATG 4 cut(s) 273, 628, 666, 862
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 2 cut(s) 308, 704
HindII GTYRAC 2 cut(s) 308, 704
HinfI GANTC 3 cut(s) 33, 230, 573
HpaII CCGG 3 cut(s) 467, 551, 559
HphI GGTGA 2 cut(s) 260, 269
Hpy166II GTNNAC 4 cut(s) 17, 308, 704, 731
Hpy188I TCNGA 3 cut(s) 198, 211, 855
Hpy8I GTNNAC 4 cut(s) 17, 308, 704, 731
Hpy99I CGWCG 2 cut(s) 485, 702
HpyAV CCTTC 1 cut(s) 882
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 2 cut(s) 239, 700
HpyCH4V TGCA 3 cut(s) 4, 269, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 721, 821
HpyF3I CTNAG 2 cut(s) 132, 752
HpySE526I ACGT 2 cut(s) 239, 700
Hsp92I GRCGYC 2 cut(s) 337, 700
Hsp92II CATG 4 cut(s) 273, 628, 666, 862
HspAI GCGC 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 67, 259, 870
MaeI CTAG 3 cut(s) 516, 570, 684
MaeII ACGT 2 cut(s) 239, 700
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 69, 261, 872
MboI GATC 3 cut(s) 67, 259, 870
MboII GAAGA 7 cut(s) 28, 62, 198, 410, 777, 780, 880
MflI RGATCY 1 cut(s) 870
MhlI GDGCHC 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 5 cut(s) 41, 159, 185, 234, 497
MluI ACGCGT 1 cut(s) 904
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 582
MnlI CCTC 8 cut(s) 30, 36, 88, 267, 410, 514, 517, 761
Mox20I TGGCCA 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 160
MscI TGGCCA 1 cut(s) 291
MseI TTAA 2 cut(s) 330, 919
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 3 cut(s) 467, 551, 559
MspR9I CCNGG 3 cut(s) 366, 552, 560
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 824, 906
MwoI GCNNNNNNNGC 2 cut(s) 721, 821
NciI CCSGG 2 cut(s) 552, 560
NcoI CCATGG 1 cut(s) 662
NdeII GATC 3 cut(s) 67, 259, 870
NlaIII CATG 4 cut(s) 273, 628, 666, 862
NsiI ATGCAT 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 33, 230
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 3 cut(s) 711, 720, 768
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 469
PsuI RGATCY 1 cut(s) 870
RsaI GTAC 3 cut(s) 587, 598, 732
RsaNI GTAC 3 cut(s) 586, 597, 731
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 330, 919
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 3 cut(s) 67, 259, 870
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 3 cut(s) 366, 552, 560
SduI GDGCHC 1 cut(s) 13
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 5 cut(s) 41, 159, 185, 234, 497
SsiI CCGC 1 cut(s) 369
SspMI CTAG 3 cut(s) 516, 570, 684
StyD4I CCNGG 3 cut(s) 364, 550, 558
StyI CCWWGG 2 cut(s) 662, 683
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 2 cut(s) 242, 703
TaqI TCGA 2 cut(s) 164, 697
TasI AATT 5 cut(s) 41, 159, 185, 234, 497
TatI WGTACW 2 cut(s) 585, 596
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 2 cut(s) 33, 230
Tru1I TTAA 2 cut(s) 330, 919
Tru9I TTAA 2 cut(s) 330, 919
TscAI CASTG 2 cut(s) 250, 317
TspDTI ATGAA 3 cut(s) 272, 455, 509
TspRI CASTG 2 cut(s) 250, 317
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 185
XmaJI CCTAGG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 160
XspI CTAG 3 cut(s) 516, 570, 684
ZraI GACGTC 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.