Rw2G046880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019379
Physical Location & Seq
Forward (+)
74316401 .. 74320363
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046880.1

Sequence Viewer

Length: 759 bp
ATGGAAAAGAAGATCCCATTGAAACGGCGAAGGGTATGGGAACAACGAGTGGATACAGGAGTTCCTAGGCTGCCACATCGACGTCAACTCGCCCAGCAGACCCAGCAGGGTGTACGATGTCCAGCTCTTGACCTCATCACTTCCAAGTCCCAGCTACCTGCCCGAGCTTCTTCTTCTAAAGTTGGCTGTATAAGTGTTGCAAACAACGCGAAAGTGAAAGTGAAGGAAAAGGTGGTTCAGAACATGGAAAAGAACATCCCATTGAAACGGCGAAGGGTATGGGAACAACGCGTGGATACAGGGTTGTATGGTCGCGGTTCCAAGTCTCAACACTGCATCACATTGACGAAAGGTGCTCCTTCACCAAACGCCCATCATTCAAGATTTGACCAAACACGTCAACGCCGTTGGCGGTGTCGTACTGCCGTTTGCCAAAAGGGCCGAAACGGTGTCGTTCGAAATAGATTTGGGAAACCGTCAAGTCGGTCCCGCCCCACCCACAACGCACAAGGCACGCAAGCAATAATATCAACGACAATCAACAATGGTGGCCCTTTAGTGATGGCGTTGACGGTCAACATCCAGCGTGGTCTGCTCCAAAATAAGCTCCCACGGAATCTCCGCCACCCACCACGTGTCTCGTTCCGATTGGACCTACCTCCACTCCTCTCCTCGTTTAAAGCCCCCACCCCGATTCCCATTTTCCATTTTACGAGCCTAGATCTTCTTCTCCTTCGTCGTCGACCGAGACAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.7

Weight (kDa)

11.96

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019379)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163051
rosa_multiflora Rmu_sc0003984.1_g000003 Rmu_sc0025720.1_g000001
rosa_roxburghii Rroxscaffold_2G00087590
rosa_samantha Rh2BG578700 Rh2CG548600 Rh2CG548700
rosa_wichuraiana Rw2G046880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 742
AccII CGCG 3 cut(s) 209, 291, 315
AciI CCGC 4 cut(s) 315, 412, 490, 622
AclWI GGATC 1 cut(s) 7
AcvI CACGTG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 2 cut(s) 114, 421
AflIII ACRYGT 3 cut(s) 289, 395, 634
AgsI TTSAA 3 cut(s) 22, 265, 381
AjiI CACGTC 1 cut(s) 398
AluBI AGCT 4 cut(s) 125, 154, 167, 607
AluI AGCT 4 cut(s) 125, 154, 167, 607
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 330, 643, 742
AlwI GGATC 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 439, 550
ApeKI GCWGC 1 cut(s) 70
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 4 cut(s) 439, 486, 551, 652
AsuHPI GGTGA 1 cut(s) 354
AsuII TTCGAA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 2 cut(s) 486, 652
AvrII CCTAGG 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BbrPI CACGTG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 381, 556
BceAI ACGGC 4 cut(s) 41, 284, 390, 410
BciVI GTATCC 2 cut(s) 46, 289
BcoDI GTCTC 3 cut(s) 330, 643, 742
BfaI CTAG 2 cut(s) 66, 719
BfuAI ACCTGC 1 cut(s) 166
BfuI GTATCC 2 cut(s) 46, 289
BglI GCCNNNNNGGC 1 cut(s) 438
BglII AGATCT 1 cut(s) 721
BisI GCNGC 1 cut(s) 71
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 486, 652
BmeT110I CYCGRG 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 4 cut(s) 439, 486, 551, 652
BmiI GGNNCC 2 cut(s) 319, 488
BmsI GCATC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 457
BsaAI YACGTR 1 cut(s) 635
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 65, 611
BsaXI ACNNNNNCTCC 4 cut(s) 603, 633, 648, 678
BseDI CCNNGG 2 cut(s) 65, 611
BseGI GGATG 2 cut(s) 255, 579
BseRI GAGGAG 2 cut(s) 656, 661
BseXI GCAGC 1 cut(s) 57
BseYI CCCAGC 3 cut(s) 93, 102, 150
Bsh1236I CGCG 3 cut(s) 209, 291, 315
Bsh1285I CGRYCG 1 cut(s) 746
BshFI GGCC 2 cut(s) 441, 552
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 162
BslFI GGGAC 2 cut(s) 133, 472
BsmAI GTCTC 3 cut(s) 330, 643, 742
BsmFI GGGAC 2 cut(s) 133, 472
BsnI GGCC 2 cut(s) 441, 552
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 12, 721
BspACI CCGC 4 cut(s) 315, 412, 490, 622
BspANI GGCC 2 cut(s) 441, 552
BspFNI CGCG 3 cut(s) 209, 291, 315
BspLI GGNNCC 2 cut(s) 319, 488
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 65, 611
BssMI GATC 2 cut(s) 12, 721
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 3 cut(s) 449, 477, 574
BstACI GRCGYC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 635
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 515, 519
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 255, 579
BstFNI CGCG 3 cut(s) 209, 291, 315
BstKTI GATC 2 cut(s) 15, 724
BstMAI GTCTC 3 cut(s) 330, 643, 742
BstMBI GATC 2 cut(s) 12, 721
BstMCI CGRYCG 1 cut(s) 746
BstMWI GCNNNNNNNGC 4 cut(s) 103, 206, 438, 592
BstUI CGCG 3 cut(s) 209, 291, 315
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 12, 721
BstYI RGATCY 2 cut(s) 12, 721
BsuI GTATCC 2 cut(s) 46, 289
BsuRI GGCC 2 cut(s) 441, 552
BtgI CCRYGG 1 cut(s) 611
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 2 cut(s) 255, 579
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 515, 519
Cfr13I GGNCC 4 cut(s) 439, 486, 551, 652
Csp6I GTAC 2 cut(s) 113, 420
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 1 cut(s) 244
CviQI GTAC 2 cut(s) 113, 420
DpnI GATC 2 cut(s) 14, 723
DpnII GATC 2 cut(s) 12, 721
DraI TTTAAA 1 cut(s) 679
DraIII CACNNNGTG 1 cut(s) 635
EciI GGCGGA 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 486, 652
Eco72I CACGTG 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 247
FaiI YATR 5 cut(s) 37, 191, 245, 280, 309
FaqI GGGAC 2 cut(s) 133, 472
FatI CATG 1 cut(s) 243
FauI CCCGC 1 cut(s) 497
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 2 cut(s) 242, 566
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 66, 719
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 3 cut(s) 97, 106, 154
HaeIII GGCC 2 cut(s) 441, 552
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 5 cut(s) 86, 401, 570, 577, 743
HindII GTYRAC 5 cut(s) 86, 401, 570, 577, 743
HinfI GANTC 2 cut(s) 616, 694
HphI GGTGA 1 cut(s) 354
Hpy166II GTNNAC 6 cut(s) 86, 113, 401, 570, 577, 743
Hpy188I TCNGA 2 cut(s) 240, 647
Hpy188III TCNNGA 2 cut(s) 128, 381
Hpy8I GTNNAC 6 cut(s) 86, 113, 401, 570, 577, 743
Hpy99I CGWCG 3 cut(s) 84, 741, 744
HpyAV CCTTC 5 cut(s) 24, 217, 267, 369, 743
HpyCH4III ACNGT 3 cut(s) 449, 477, 574
HpyCH4IV ACGT 3 cut(s) 82, 397, 634
HpyCH4V TGCA 2 cut(s) 200, 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 206, 438, 592
HpySE526I ACGT 3 cut(s) 82, 397, 634
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 12, 721
LmnI GCTCC 3 cut(s) 361, 600, 612
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 345
MaeI CTAG 2 cut(s) 66, 719
MaeII ACGT 3 cut(s) 82, 397, 634
MalI GATC 2 cut(s) 14, 723
MboI GATC 2 cut(s) 12, 721
MboII GAAGA 5 cut(s) 22, 162, 165, 716, 719
MflI RGATCY 2 cut(s) 12, 721
MhlI GDGCHC 1 cut(s) 358
MluI ACGCGT 1 cut(s) 289
MnlI CCTC 4 cut(s) 143, 669, 677, 682
MseI TTAA 1 cut(s) 678
MvnI CGCG 3 cut(s) 209, 291, 315
MwoI GCNNNNNNNGC 4 cut(s) 103, 206, 438, 592
NdeII GATC 2 cut(s) 12, 721
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 319, 488
NspV TTCGAA 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PfeI GAWTC 2 cut(s) 616, 694
PkrI GCNGC 1 cut(s) 72
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 635
PspCI CACGTG 1 cut(s) 635
PspFI CCCAGC 3 cut(s) 93, 102, 150
PspN4I GGNNCC 2 cut(s) 319, 488
PspPI GGNCC 4 cut(s) 439, 486, 551, 652
PsuI RGATCY 2 cut(s) 12, 721
RsaI GTAC 2 cut(s) 114, 421
RsaNI GTAC 2 cut(s) 113, 420
SalI GTCGAC 1 cut(s) 741
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 12, 721
Sau96I GGNCC 4 cut(s) 439, 486, 551, 652
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 457
SinI GGWCC 2 cut(s) 486, 652
SsiI CCGC 4 cut(s) 315, 412, 490, 622
SspMI CTAG 2 cut(s) 66, 719
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 449, 477, 574
TaiI ACGT 3 cut(s) 85, 400, 637
TaqI TCGA 3 cut(s) 79, 457, 742
TaqII GACCGA 1 cut(s) 474
TfiI GAWTC 2 cut(s) 616, 694
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 338
TseI GCWGC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 486, 652
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 2 cut(s) 66, 719
ZraI GACGTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.