RchiOBHm_Chr2g0165861

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
80716441 .. 80722272
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53379

Sequence Viewer

Length: 1428 bp
ATGGTTACAGTCATGGTCAAAACACAGAGCACCCTCCTACTGATTTCCATGGTCTCTGTTTTGCTTCTGGGGCTGTTCATAAGCCCAAGTCATGGATCAGTGAATGAAGATGAAGAAGCTGATAGGATTGTATCACTTCCTGGGCAACCCAAGGTCTCTTTCCAGCAGTTTTCGGGTTACGTCACTGTAAATCACAAGGTTGGAAGAGCCCTCTTTTACTGGCTCACTGAGGCTGCTGTTAAAGACCCCCTGTCTAAGCCTCTGGTCATTTGGCTCAATGGAGGCCCTGGTTGCTCGTCGGTGGCATATGGTGCATCGGAAGAGATAGGTCCATTCAGAATAAACAAGACAGCTTCGGGTCTGTACTTGAACAAGTTCTCATGGAACAGCGAGGCCAACCTCTTGTTCTTGGAAACTCCAGCCGGTGTTGGCTTCTCCTACTCCAATCGCTCCGCAGATCTCTTTGATACCGGGGATGGCCGCACGGCAAAGGACTCACTGAACTTCATAATCGGATGGTTGGATCGATTTCCCCGATACAAGAACCGAGAAGTATATCTCACTGGAGAGAGCTATGCTGGACATTACGTGCCTCAGCTTGCCAAAGCAATTATCATTTACAATGAAAACTCCAAGCACCCGATTAATCTCAAAGGAATAATGGTGGGTAATGCCGTGACAGACAACTACTATGATAACCTGGGGACAGTAACATACTGGTGGAGTCACGCCATGATCTCCGATAAGACCTACAAGCAGCTCATCCACACTTGTGATTTTCGAAATCAAAAGAACTCCGACGAATGTGAATCACTGTATAGCTACGCGATGGATAAAGAATTTGGGAACATAGACCAGTACAACATCTATGCACCACCCTGCAACAACTCTGATGGTAGCACTACTTCAATGTCTACGAGACAGACTATGCGTTTGCCTCATCGACCGATGTTTCGACAAATATCTGGCTATGATCCTTGTACGGAAAAATATGCTGAGTTATATTACAATAGACCAGAAGTACAGAAAGCATTCCATGCCAACATTACTAAAATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTAAATCGAAATTGGAACGATACAGATGTATCTGTTCTTCCTATTTACAAGGACATGATTGCTGCTGGTTTGAGAATTTGGGTTTTCAGTGGAGACGTTGACTCAGTGGTGCCGGTCACAGCGACCAGGTATTCCCTTGCACAACTCAAATTGGCAATCAAAATTCCATGGTATCCCTGGTACACAAAGAAACAGGTGGGAGGTTGGACAGAGGTTTACGAAGGGTTGACATTTGCAACAGTGAGAGGAGCAGGTCATGAAGTCCCGCTATTCAAGCCAAGAGCAGCTCTTCAGCTTTTCAAATCCTTTATTAAGGGGAAGCCCCTTCCAAAGTCGTCATGA

Protein Analysis

475

Amino Acids

53.57

Weight (kDa)

8.73

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 47 - 468 1.6e-142 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010693)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
Acc36I ACCTGC 1 cut(s) 1328
AccB1I GGYRCC 1 cut(s) 1195
AccB7I CCANNNNNTGG 1 cut(s) 92
AccI GTMKAC 1 cut(s) 914
AccII CGCG 1 cut(s) 827
AciI CCGC 3 cut(s) 453, 481, 1352
AclWI GGATC 3 cut(s) 103, 531, 968
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 4 cut(s) 839, 1053, 1161, 1248
AcuI CTGAAG 1 cut(s) 1361
AfaI GTAC 5 cut(s) 365, 860, 982, 1023, 1268
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 4 cut(s) 370, 909, 1360, 1387
AhdI GACNNNNNGTC 1 cut(s) 250
AjnI CCWGG 5 cut(s) 139, 286, 699, 1211, 1262
AjuI GAANNNNNNNTTGG 4 cut(s) 143, 175, 389, 421
AleI CACNNNNGTG 1 cut(s) 771
AluBI AGCT 8 cut(s) 119, 353, 573, 598, 760, 822, 1373, 1381
AluI AGCT 8 cut(s) 119, 353, 573, 598, 760, 822, 1373, 1381
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 4 cut(s) 58, 160, 913, 1173
AlwI GGATC 3 cut(s) 103, 531, 968
AoxI GGCC 3 cut(s) 283, 393, 478
ApeKI GCWGC 4 cut(s) 233, 757, 1148, 1370
ApoI RAATTY 4 cut(s) 839, 1053, 1161, 1248
ArsI GACNNNNNNTTYG 4 cut(s) 916, 936, 948, 968
AseI ATTAAT 1 cut(s) 645
Asp700I GAANNNNTTC 2 cut(s) 374, 1031
AspS9I GGNCC 2 cut(s) 284, 329
AsuC2I CCSGG 1 cut(s) 472
AsuII TTCGAA 1 cut(s) 781
AvaII GGWCC 1 cut(s) 329
BaeI ACNNNNGTAYC 4 cut(s) 1098, 1098, 1131, 1131
BanI GGYRCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 211
BarI GAAGNNNNNNTAC 4 cut(s) 889, 921, 1107, 1139
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 220, 769, 1135, 1382
BccI CCATC 4 cut(s) 470, 510, 823, 887
BceAI ACGGC 2 cut(s) 501, 659
BciT130I CCWGG 5 cut(s) 141, 288, 701, 1213, 1264
BciVI GTATCC 1 cut(s) 1269
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 4 cut(s) 58, 160, 913, 1173
BfuAI ACCTGC 1 cut(s) 1328
BfuI GTATCC 1 cut(s) 1269
BglII AGATCT 1 cut(s) 457
BisI GCNGC 5 cut(s) 234, 481, 758, 1149, 1371
BlsI GCNGC 5 cut(s) 235, 482, 759, 1150, 1372
Bme1390I CCNGG 6 cut(s) 141, 288, 472, 701, 1213, 1264
Bme18I GGWCC 1 cut(s) 329
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 284, 329
BmiI GGNNCC 1 cut(s) 1197
BmrFI CCNGG 6 cut(s) 141, 288, 472, 701, 1213, 1264
BmsI GCATC 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 402, 585
Bpu10I CCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 781
BpuMI CCSGG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 589
BsaI GGTCTC 2 cut(s) 58, 160
BsaJI CCNNGG 8 cut(s) 48, 140, 150, 286, 471, 700, 1253, 1262
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 2 cut(s) 422, 1198
Bse1I ACTGG 4 cut(s) 224, 568, 722, 856
BseBI CCWGG 5 cut(s) 141, 288, 701, 1213, 1264
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 8 cut(s) 48, 140, 150, 286, 471, 700, 1253, 1262
BseGI GGATG 3 cut(s) 481, 521, 762
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 4 cut(s) 219, 608, 987, 1203
BseNI ACTGG 4 cut(s) 224, 568, 722, 856
BseRI GAGGAG 1 cut(s) 1347
BseXI GCAGC 4 cut(s) 220, 769, 1135, 1382
Bsh1236I CGCG 1 cut(s) 827
Bsh1285I CGRYCG 1 cut(s) 947
BshFI GGCC 3 cut(s) 285, 395, 480
BshNI GGYRCC 1 cut(s) 1195
BshVI ATCGAT 1 cut(s) 526
BsiEI CGRYCG 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 423, 471, 1199
BslFI GGGAC 2 cut(s) 718, 1334
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 4 cut(s) 58, 160, 913, 1173
BsmBI CGTCTC 1 cut(s) 1173
BsmFI GGGAC 2 cut(s) 718, 1334
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 3 cut(s) 285, 395, 480
Bso31I GGTCTC 2 cut(s) 58, 160
Bsp119I TTCGAA 1 cut(s) 781
Bsp1286I GDGCHC 2 cut(s) 32, 211
Bsp143I GATC 5 cut(s) 95, 457, 523, 735, 973
Bsp19I CCATGG 2 cut(s) 48, 1253
BspACI CCGC 3 cut(s) 453, 481, 1352
BspANI GGCC 3 cut(s) 285, 395, 480
BspCNI CTCAG 4 cut(s) 220, 607, 988, 1202
BspDI ATCGAT 1 cut(s) 526
BspFNI CGCG 1 cut(s) 827
BspHI TCATGA 2 cut(s) 1342, 1424
BspLI GGNNCC 1 cut(s) 1197
BspMI ACCTGC 1 cut(s) 1328
BspPI GGATC 3 cut(s) 103, 531, 968
BspQI GCTCTTC 2 cut(s) 199, 1380
BspT104I TTCGAA 1 cut(s) 781
BspT107I GGYRCC 1 cut(s) 1195
BspTNI GGTCTC 2 cut(s) 58, 160
BsrFI RCCGGY 2 cut(s) 422, 1198
BsrI ACTGG 4 cut(s) 224, 568, 722, 856
BssAI RCCGGY 2 cut(s) 422, 1198
BssECI CCNNGG 8 cut(s) 48, 140, 150, 286, 471, 700, 1253, 1262
BssMI GATC 5 cut(s) 95, 457, 523, 735, 973
BssT1I CCWWGG 3 cut(s) 48, 150, 1253
Bst2UI CCWGG 5 cut(s) 141, 288, 701, 1213, 1264
Bst4CI ACNGT 5 cut(s) 10, 187, 709, 816, 1327
Bst6I CTCTTC 3 cut(s) 199, 315, 1380
BstAPI GCANNNNNTGC 2 cut(s) 311, 1037
BstBAI YACGTR 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 2 cut(s) 600, 1075
BstDEI CTNAG 5 cut(s) 228, 255, 594, 996, 1189
BstDSI CCRYGG 2 cut(s) 48, 1253
BstF5I GGATG 3 cut(s) 481, 521, 762
BstFNI CGCG 1 cut(s) 827
BstKTI GATC 5 cut(s) 98, 460, 526, 738, 976
BstMAI GTCTC 4 cut(s) 58, 160, 913, 1173
BstMBI GATC 5 cut(s) 95, 457, 523, 735, 973
BstMCI CGRYCG 1 cut(s) 947
BstMWI GCNNNNNNNGC 5 cut(s) 70, 291, 311, 1037, 1360
BstNI CCWGG 5 cut(s) 141, 288, 701, 1213, 1264
BstSCI CCNGG 6 cut(s) 139, 286, 470, 699, 1211, 1262
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 4 cut(s) 220, 769, 1135, 1382
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 526
BsuI GTATCC 1 cut(s) 1269
BsuRI GGCC 3 cut(s) 285, 395, 480
BsuTUI ATCGAT 1 cut(s) 526
BtgI CCRYGG 2 cut(s) 48, 1253
BtgZI GCGATG 1 cut(s) 842
BtsCI GGATG 3 cut(s) 481, 521, 762
BtsI GCAGTG 1 cut(s) 1084
BveI ACCTGC 1 cut(s) 1328
Cac8I GCNNGC 2 cut(s) 600, 1075
CciI TCATGA 2 cut(s) 1342, 1424
Cfr10I RCCGGY 2 cut(s) 422, 1198
Cfr13I GGNCC 2 cut(s) 284, 329
ClaI ATCGAT 1 cut(s) 526
CsiI ACCWGGT 1 cut(s) 1211
Csp6I GTAC 5 cut(s) 364, 859, 981, 1022, 1267
CviQI GTAC 5 cut(s) 364, 859, 981, 1022, 1267
DdeI CTNAG 5 cut(s) 228, 255, 594, 996, 1189
DpnI GATC 5 cut(s) 97, 459, 525, 737, 975
DpnII GATC 5 cut(s) 95, 457, 523, 735, 973
DraI TTTAAA 1 cut(s) 1089
DriI GACNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 3 cut(s) 199, 315, 1380
Eam1105I GACNNNNNGTC 1 cut(s) 250
EarI CTCTTC 3 cut(s) 199, 315, 1380
Eco130I CCWWGG 3 cut(s) 48, 150, 1253
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 2 cut(s) 58, 160
Eco47I GGWCC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 1361
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 5 cut(s) 139, 286, 699, 1211, 1262
EcoT14I CCWWGG 3 cut(s) 48, 150, 1253
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 3 cut(s) 48, 150, 1253
Esp3I CGTCTC 1 cut(s) 1173
FaqI GGGAC 2 cut(s) 718, 1334
FauI CCCGC 1 cut(s) 1359
FauNDI CATATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 5 cut(s) 234, 481, 758, 1149, 1371
FokI GGATG 3 cut(s) 488, 528, 749
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 5 cut(s) 234, 481, 758, 1149, 1371
GluI GCNGC 5 cut(s) 234, 481, 758, 1149, 1371
GsuI CTGGAG 2 cut(s) 402, 585
HaeIII GGCC 3 cut(s) 285, 395, 480
HapII CCGG 3 cut(s) 423, 471, 1199
HincII GTYRAC 2 cut(s) 1186, 1314
HindII GTYRAC 2 cut(s) 1186, 1314
HinfI GANTC 4 cut(s) 494, 724, 809, 1187
HpaII CCGG 3 cut(s) 423, 471, 1199
Hpy166II GTNNAC 6 cut(s) 915, 1068, 1186, 1269, 1303, 1314
Hpy188I TCNGA 6 cut(s) 319, 338, 515, 742, 799, 892
Hpy188III TCNNGA 2 cut(s) 1343, 1425
Hpy8I GTNNAC 6 cut(s) 915, 1068, 1186, 1269, 1303, 1314
Hpy99I CGWCG 2 cut(s) 301, 803
HpyAV CCTTC 2 cut(s) 1301, 1421
HpyCH4III ACNGT 5 cut(s) 10, 187, 709, 816, 1327
HpyCH4IV ACGT 3 cut(s) 180, 588, 1182
HpyCH4V TGCA 6 cut(s) 314, 872, 882, 1077, 1226, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 291, 311, 1037, 1360
HpyF3I CTNAG 5 cut(s) 228, 255, 594, 996, 1189
HpySE526I ACGT 3 cut(s) 180, 588, 1182
Kzo9I GATC 5 cut(s) 95, 457, 523, 735, 973
LguI GCTCTTC 2 cut(s) 199, 1380
LmnI GCTCC 2 cut(s) 455, 1334
Lsp1109I GCAGC 4 cut(s) 220, 769, 1135, 1382
LweI GCATC 1 cut(s) 323
MabI ACCWGGT 1 cut(s) 1211
MaeII ACGT 3 cut(s) 180, 588, 1182
MaeIII GTNAC 7 cut(s) 4, 176, 181, 676, 709, 725, 1201
MalI GATC 5 cut(s) 97, 459, 525, 737, 975
MboI GATC 5 cut(s) 95, 457, 523, 735, 973
MboII GAAGA 6 cut(s) 119, 125, 216, 332, 1115, 1367
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 32, 211
MluCI AATT 7 cut(s) 609, 839, 1053, 1096, 1161, 1235, 1248
MlyI GAGTC 3 cut(s) 488, 733, 1181
MmeI TCCRAC 4 cut(s) 181, 501, 822, 1271
MroXI GAANNNNTTC 2 cut(s) 374, 1031
MseI TTAA 4 cut(s) 240, 645, 1088, 1398
MslI CAYNNNNRTG 2 cut(s) 718, 771
MspI CCGG 3 cut(s) 423, 471, 1199
MspR9I CCNGG 6 cut(s) 141, 288, 472, 701, 1213, 1264
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 5 cut(s) 141, 288, 701, 1213, 1264
MvnI CGCG 1 cut(s) 827
MwoI GCNNNNNNNGC 5 cut(s) 70, 291, 311, 1037, 1360
NciI CCSGG 1 cut(s) 472
NcoI CCATGG 2 cut(s) 48, 1253
NdeI CATATG 1 cut(s) 307
NdeII GATC 5 cut(s) 95, 457, 523, 735, 973
NlaIV GGNNCC 1 cut(s) 1197
NmuCI GTSAC 4 cut(s) 181, 676, 725, 1201
NspV TTCGAA 1 cut(s) 781
OliI CACNNNNGTG 1 cut(s) 771
PagI TCATGA 2 cut(s) 1342, 1424
PciSI GCTCTTC 2 cut(s) 199, 1380
PcsI WCGNNNNNNNCGW 1 cut(s) 532
PctI GAATGC 1 cut(s) 1031
PdmI GAANNNNTTC 2 cut(s) 374, 1031
PfeI GAWTC 1 cut(s) 809
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 5 cut(s) 235, 482, 759, 1150, 1372
PleI GAGTC 3 cut(s) 488, 732, 1181
PpsI GAGTC 3 cut(s) 488, 732, 1181
Ppu21I YACGTR 1 cut(s) 589
PshBI ATTAAT 1 cut(s) 645
PsiI TTATAA 1 cut(s) 1062
Psp6I CCWGG 5 cut(s) 139, 286, 699, 1211, 1262
PspGI CCWGG 5 cut(s) 139, 286, 699, 1211, 1262
PspN4I GGNNCC 1 cut(s) 1197
PspPI GGNCC 2 cut(s) 284, 329
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 5 cut(s) 365, 860, 982, 1023, 1268
RsaNI GTAC 5 cut(s) 364, 859, 981, 1022, 1267
RseI CAYNNNNRTG 2 cut(s) 718, 771
SapI GCTCTTC 2 cut(s) 199, 1380
SaqAI TTAA 4 cut(s) 240, 645, 1088, 1398
SatI GCNGC 5 cut(s) 234, 481, 758, 1149, 1371
Sau3AI GATC 5 cut(s) 95, 457, 523, 735, 973
Sau96I GGNCC 2 cut(s) 284, 329
SchI GAGTC 3 cut(s) 488, 733, 1181
ScrFI CCNGG 6 cut(s) 141, 288, 472, 701, 1213, 1264
SduI GDGCHC 2 cut(s) 32, 211
SexAI ACCWGGT 1 cut(s) 1211
SfaNI GCATC 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 718, 771
Sse9I AATT 7 cut(s) 609, 839, 1053, 1096, 1161, 1235, 1248
SsiI CCGC 3 cut(s) 453, 481, 1352
StyD4I CCNGG 6 cut(s) 139, 286, 470, 699, 1211, 1262
StyI CCWWGG 3 cut(s) 48, 150, 1253
TaaI ACNGT 5 cut(s) 10, 187, 709, 816, 1327
TaiI ACGT 3 cut(s) 183, 591, 1185
TaqI TCGA 5 cut(s) 526, 781, 943, 955, 1093
TaqII GACCGA 1 cut(s) 961
TasI AATT 7 cut(s) 609, 839, 1053, 1096, 1161, 1235, 1248
TatI WGTACW 3 cut(s) 363, 858, 1021
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 4 cut(s) 240, 645, 1088, 1398
Tru9I TTAA 4 cut(s) 240, 645, 1088, 1398
TseFI GTSAC 4 cut(s) 181, 676, 725, 1201
TseI GCWGC 4 cut(s) 233, 757, 1148, 1370
Tsp45I GTSAC 4 cut(s) 181, 676, 725, 1201
TspDTI ATGAA 6 cut(s) 67, 120, 126, 496, 639, 1359
TspGWI ACGGA 1 cut(s) 998
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 4 cut(s) 839, 1053, 1161, 1248
XcmI CCANNNNNNNNNTGG 1 cut(s) 1260
XmiI GTMKAC 1 cut(s) 914
XmnI GAANNNNTTC 2 cut(s) 374, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.