Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010693

Physical Location & Seq

Genomic Coordinates Forward (+)

81734155 .. 81735743

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG584300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCAGGTGGGTAATGCCGTGACAGACAACTACTATGATAACCTGGGGACAGTAACATACTGGTGGAGTCACGCCATGATCTCCGATAAGACCTACAAGCAGCTCATCCACACTTGTGATTTTCGAAATCAGAAGAACTCCGACGAATGTGAATCACTGTATAGCTACGCGATGGATAAAGAATTTGGGAACATAGACCAGTACAACATCTATGCACCACCCTGCAACAACTCTGATGGTAGCACTACTTCAATGTCTACGAGACAGACTATGCGTTTGCCTCATCGACCGGTGGGAGGTTGGACAGAGGTTTACGAAGGGTTGACATTTGCAACAGTGAGAGGAGCAGGTCATGAAGTGCCGCTATTCAAGCCAAGAGCAGCTCTTCAGCTTTTCAAATCCTTTATTAAGGGGAAGCCCCTTCCAAAGTCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

145

Amino Acids

16.48

Weight (kDa)

7.71

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 84	9.6e-12	Serine carboxypeptidase
Peptidase_S10	PF00450	93 - 138	1.6e-12	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02110
fragaria_vesca	FvH4_6g46890 FvH4_6g46890 FvH4_6g46890 FvH4_6g46890
malus_domestica	MD09G1066700.v1.1
prunus_persica	Prupe.3G255000_v2.0.a1 Prupe.3G255000_v2.0.a1
pyrus_communis	pycom111g05590
rosa_chinensis	RchiOBHm_Chr2g0165861
rosa_laevigata	RLG00000021562
rosa_multiflora	Rmu_co8359035.1_g000001 Rmu_sc0008709.1_g000008
rosa_roxburghii	Rroxscaffold_2G00085410
rosa_rugosa	Rorug02G0518400
rosa_samantha	Rh2AG584200 Rh2AG584300 Rh2BG596100 Rh2CG567000
rosa_wichuraiana	Rw2G048710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	252, 370, 397
AjnI	CCWGG	1 cut(s)	42
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	103, 165, 383, 391
AluI	AGCT	4 cut(s)	103, 165, 383, 391
Alw26I	GTCTC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	100, 380
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsiGI	ACCGGT	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BbvI	GCAGC	2 cut(s)	112, 392
BccI	CCATC	2 cut(s)	166, 230
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	3 cut(s)	101, 362, 381
BlsI	GCNGC	3 cut(s)	102, 363, 382
Bme1390I	CCNGG	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	65, 199
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseNI	ACTGG	2 cut(s)	65, 199
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	112, 392
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	352, 434
BspMI	ACCTGC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	65, 199
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	52, 159, 337
Bst6I	CTCTTC	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	112, 392
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	155, 342
BveI	ACCTGC	1 cut(s)	338
CciI	TCATGA	2 cut(s)	352, 434
Cfr10I	RCCGGY	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	3 cut(s)	76, 353, 435
CviJI	RGCY	6 cut(s)	103, 165, 373, 383, 391, 418
CviKI_1	RGCY	6 cut(s)	103, 165, 373, 383, 391, 418
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	79, 356, 438
FaiI	YATR	9 cut(s)	36, 58, 77, 162, 194, 213, 272, 354, 436
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	75, 352, 434
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	3 cut(s)	101, 362, 381
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	101, 362, 381
GluI	GCNGC	3 cut(s)	101, 362, 381
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	3 cut(s)	79, 356, 438
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	67, 152
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	258, 313, 324
Hpy188I	TCNGA	4 cut(s)	85, 132, 142, 235
Hpy188III	TCNNGA	2 cut(s)	353, 435
Hpy8I	GTNNAC	3 cut(s)	258, 313, 324
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	311, 431
HpyCH4III	ACNGT	3 cut(s)	52, 159, 337
HpyCH4V	TGCA	4 cut(s)	4, 215, 225, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	79, 356, 438
Kzo9I	GATC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	7 cut(s)	29, 46, 56, 212, 235, 303, 333
Lsp1109I	GCAGC	2 cut(s)	112, 392
MaeIII	GTNAC	3 cut(s)	19, 52, 68
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	145, 377
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	165, 281
MnlI	CCTC	4 cut(s)	290, 291, 301, 335
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	2 cut(s)	61, 114
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	79, 356, 438
NmuCI	GTSAC	2 cut(s)	19, 68
NspV	TTCGAA	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	114
PagI	TCATGA	2 cut(s)	352, 434
PciSI	GCTCTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	102, 363, 382
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	61, 114
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	3 cut(s)	101, 362, 381
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	61, 114
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	52, 159, 337
TaqI	TCGA	2 cut(s)	124, 286
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	162, 342
TseFI	GTSAC	2 cut(s)	19, 68
TseI	GCWGC	2 cut(s)	100, 380
Tsp45I	GTSAC	2 cut(s)	19, 68
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	162, 342
XapI	RAATTY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.