Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359035.1

Orthogroup ID

OG0010693

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1055

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

atggtgggtaatgccgtgacagacaactactatgataacctggggacagtaacatactggtggagtcacgccatgatctccgataagacctacaagcagctcatccacacttgtgattttcgaaatcaaaagaactccgacgaatgtgaatcactgtatagctacgcgatggataaagaatttgggaacatagaccagtacaacatctatgcaccaccctgcaacaactctgatggtagcactacttcaatgtctacgagacagactatgcgtttgcctcatcgaccgatgtttcgacaaatatctggctatgatccttgtacggaaaaatatgctgagttatattacaatagaccagaagtacagaaagcattccatgccaacattactaaaattccttataagtggactgcttgcagtgaggttttaaatcgaaattggaacgatacagatgtatctgttcttcctatttacaaggacatgattgctgctggtttgagaatttgggttttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

171

Amino Acids

20.03

Weight (kDa)

6.06

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02110
fragaria_vesca	FvH4_6g46890 FvH4_6g46890 FvH4_6g46890 FvH4_6g46890
malus_domestica	MD09G1066700.v1.1
prunus_persica	Prupe.3G255000_v2.0.a1 Prupe.3G255000_v2.0.a1
pyrus_communis	pycom111g05590
rosa_chinensis	RchiOBHm_Chr2g0165861
rosa_laevigata	RLG00000021562
rosa_multiflora	Rmu_co8359035.1_g000001 Rmu_sc0008709.1_g000008
rosa_roxburghii	Rroxscaffold_2G00085410
rosa_rugosa	Rorug02G0518400
rosa_samantha	Rh2AG584200 Rh2AG584300 Rh2BG596100 Rh2CG567000
rosa_wichuraiana	Rw2G048710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	3 cut(s)	179, 393, 501
AfaI	GTAC	3 cut(s)	200, 322, 363
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	39
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	100, 162
AluI	AGCT	2 cut(s)	100, 162
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	97, 488
ApoI	RAATTY	3 cut(s)	179, 393, 501
ArsI	GACNNNNNNTTYG	4 cut(s)	256, 276, 288, 308
Asp700I	GAANNNNTTC	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	121
BaeI	ACNNNNGTAYC	4 cut(s)	438, 438, 471, 471
BarI	GAAGNNNNNNTAC	4 cut(s)	229, 261, 447, 479
BbvI	GCAGC	2 cut(s)	109, 475
BccI	CCATC	2 cut(s)	163, 227
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	98, 489
BlsI	GCNGC	2 cut(s)	99, 490
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	62, 196
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	62, 196
BseXI	GCAGC	2 cut(s)	109, 475
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	75, 313
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	62, 196
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	75, 313
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	49, 156
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	78, 316
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	75, 313
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	109, 475
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	152, 424
Cac8I	GCNNGC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	199, 321, 362
CviAII	CATG	3 cut(s)	73, 377, 481
CviJI	RGCY	3 cut(s)	100, 162, 309
CviKI_1	RGCY	3 cut(s)	100, 162, 309
CviQI	GTAC	3 cut(s)	199, 321, 362
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	77, 315
DpnII	GATC	2 cut(s)	75, 313
DraI	TTTAAA	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	76, 380, 484
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	72, 376, 480
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	98, 489
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	98, 489
GluI	GCNGC	2 cut(s)	98, 489
Hin1II	CATG	3 cut(s)	76, 380, 484
HinfI	GANTC	2 cut(s)	64, 149
Hpy166II	GTNNAC	2 cut(s)	255, 408
Hpy188I	TCNGA	3 cut(s)	82, 139, 232
Hpy8I	GTNNAC	2 cut(s)	255, 408
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	49, 156
HpyCH4V	TGCA	3 cut(s)	212, 222, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	76, 380, 484
Kzo9I	GATC	2 cut(s)	75, 313
LpnPI	CCDG	8 cut(s)	26, 43, 53, 209, 232, 291, 369, 477
Lsp1109I	GCAGC	2 cut(s)	109, 475
MaeIII	GTNAC	3 cut(s)	16, 49, 65
MalI	GATC	2 cut(s)	77, 315
MboI	GATC	2 cut(s)	75, 313
MboII	GAAGA	1 cut(s)	455
MluCI	AATT	4 cut(s)	179, 393, 436, 501
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	288, 415
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	2 cut(s)	58, 111
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	75, 313
NlaIII	CATG	3 cut(s)	76, 380, 484
NmuCI	GTSAC	2 cut(s)	16, 65
NspV	TTCGAA	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	111
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	99, 490
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
RsaI	GTAC	3 cut(s)	200, 322, 363
RsaNI	GTAC	3 cut(s)	199, 321, 362
RseI	CAYNNNNRTG	2 cut(s)	58, 111
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	98, 489
Sau3AI	GATC	2 cut(s)	75, 313
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	5 cut(s)	42, 92, 102, 164, 426
SfuI	TTCGAA	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	58, 111
Sse9I	AATT	4 cut(s)	179, 393, 436, 501
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	49, 156
TaqI	TCGA	4 cut(s)	121, 283, 295, 433
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	4 cut(s)	179, 393, 436, 501
TatI	WGTACW	2 cut(s)	198, 361
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	2 cut(s)	159, 424
TseFI	GTSAC	2 cut(s)	16, 65
TseI	GCWGC	2 cut(s)	97, 488
Tsp45I	GTSAC	2 cut(s)	16, 65
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	159, 424
XapI	RAATTY	3 cut(s)	179, 393, 501
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.