Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010693

Physical Location & Seq

Genomic Coordinates Forward (+)

81731446 .. 81733901

Gene Structure 2456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG584200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTACAGTCATGGTCAAAACACAGAGCACCCTCCTACTGATTTCCATGGTCTCTGTTTTGCTTCTGGGGCTGTTCATAAGCGCAAGTCATGGATCAGTGAATGAAGATGAAGAAGCTGATAGGATTGTATCACTTCCTGGGCAACCCAAGGTCTCTTTCCAGCAGTTTTCGGGTTACGTCACTGTAAATCACAAGGTTGGAAGAGCCCTCTTTTACTGGCTCACTGAGGCTGCTGTTAAAGATCCCCTGTCTAAGCCTCTGGTCATTTGGCTCAATGGAGGCCCTGGTTGCTCGTCGGTGGCATATGGTGCATCGGAAGAGATAGGTCCATTCAGAATAAACAAGACAGCTTCGGGTCTGTACTTGAACAAGTTCTCATGGAACACCGAGGCCAACCTCTTGTTCTTGGAAACTCCAGCCGGTGTTGGCTTCTCCTACTCCAATCGCTCCGCAGATCTGTTTGATACCGGGGATGGCCGCACGGGTATGTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

166

Amino Acids

17.98

Weight (kDa)

5.63

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	47 - 162	1.4e-45	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02110
fragaria_vesca	FvH4_6g46890 FvH4_6g46890 FvH4_6g46890 FvH4_6g46890
malus_domestica	MD09G1066700.v1.1
prunus_persica	Prupe.3G255000_v2.0.a1 Prupe.3G255000_v2.0.a1
pyrus_communis	pycom111g05590
rosa_chinensis	RchiOBHm_Chr2g0165861
rosa_laevigata	RLG00000021562
rosa_multiflora	Rmu_co8359035.1_g000001 Rmu_sc0008709.1_g000008
rosa_roxburghii	Rroxscaffold_2G00085410
rosa_rugosa	Rorug02G0518400
rosa_samantha	Rh2AG584200 Rh2AG584300 Rh2BG596100 Rh2CG567000
rosa_wichuraiana	Rw2G048710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	2 cut(s)	453, 481
AclWI	GGATC	2 cut(s)	103, 239
AcoI	YGGCCR	1 cut(s)	478
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	139, 286
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 389, 421
AluBI	AGCT	2 cut(s)	119, 353
AluI	AGCT	2 cut(s)	119, 353
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	58, 160
AlwI	GGATC	2 cut(s)	103, 239
AoxI	GGCC	3 cut(s)	283, 393, 478
ApeKI	GCWGC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	284, 329
AsuC2I	CCSGG	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	141, 288
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	58, 160
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	2 cut(s)	234, 481
BlsI	GCNGC	2 cut(s)	235, 482
Bme1390I	CCNGG	3 cut(s)	141, 288, 472
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	284, 329
BmrFI	CCNGG	3 cut(s)	141, 288, 472
BmsI	GCATC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	472
BsaI	GGTCTC	2 cut(s)	58, 160
BsaJI	CCNNGG	6 cut(s)	48, 140, 150, 286, 390, 471
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	141, 288
BseDI	CCNNGG	6 cut(s)	48, 140, 150, 286, 390, 471
BseGI	GGATG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	3 cut(s)	285, 395, 480
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	423, 471
BsmAI	GTCTC	2 cut(s)	58, 160
BsnI	GGCC	3 cut(s)	285, 395, 480
Bso31I	GGTCTC	2 cut(s)	58, 160
Bsp1286I	GDGCHC	2 cut(s)	32, 211
Bsp143I	GATC	3 cut(s)	95, 244, 457
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	2 cut(s)	453, 481
BspANI	GGCC	3 cut(s)	285, 395, 480
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	103, 239
BspQI	GCTCTTC	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	58, 160
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	6 cut(s)	48, 140, 150, 286, 390, 471
BssMI	GATC	3 cut(s)	95, 244, 457
BssNAI	GTATAC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	48, 150
Bst1107I	GTATAC	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	141, 288
Bst4CI	ACNGT	2 cut(s)	10, 187
Bst6I	CTCTTC	2 cut(s)	199, 315
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	228, 255
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	98, 247, 460
BstMAI	GTCTC	2 cut(s)	58, 160
BstMBI	GATC	3 cut(s)	95, 244, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 291, 311
BstNI	CCWGG	2 cut(s)	141, 288
BstSCI	CCNGG	3 cut(s)	139, 286, 470
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	244, 457
BstYI	RGATCY	2 cut(s)	244, 457
BstZ17I	GTATAC	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	285, 395, 480
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	105, 183, 225
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	284, 329
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	13, 49, 92, 381
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	228, 255
DpnI	GATC	3 cut(s)	97, 246, 459
DpnII	GATC	3 cut(s)	95, 244, 457
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	199, 315
EarI	CTCTTC	2 cut(s)	199, 315
Eco130I	CCWWGG	2 cut(s)	48, 150
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	2 cut(s)	58, 160
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	139, 286
EcoT14I	CCWWGG	2 cut(s)	48, 150
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	48, 150
FaeI	CATG	4 cut(s)	16, 52, 95, 384
FaiI	YATR	9 cut(s)	14, 50, 80, 93, 307, 309, 382, 491, 495
FatI	CATG	4 cut(s)	12, 48, 91, 380
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	234, 481
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	234, 481
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	234, 481
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	285, 395, 480
HapII	CCGG	2 cut(s)	423, 471
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	16, 52, 95, 384
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	423, 471
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	2 cut(s)	319, 338
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	10, 187
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 291, 311
HpyF3I	CTNAG	2 cut(s)	228, 255
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	16, 52, 95, 384
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	95, 244, 457
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	323
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	4, 176, 181
MalI	GATC	3 cut(s)	97, 246, 459
MboI	GATC	3 cut(s)	95, 244, 457
MboII	GAAGA	4 cut(s)	119, 125, 216, 332
MflI	RGATCY	2 cut(s)	244, 457
MhlI	GDGCHC	2 cut(s)	32, 211
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	44, 221, 223, 270, 275, 385, 410
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	2 cut(s)	423, 471
MspR9I	CCNGG	3 cut(s)	141, 288, 472
MvaI	CCWGG	2 cut(s)	141, 288
MwoI	GCNNNNNNNGC	3 cut(s)	70, 291, 311
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	95, 244, 457
NlaIII	CATG	4 cut(s)	16, 52, 95, 384
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	235, 482
Psp6I	CCWGG	2 cut(s)	139, 286
PspGI	CCWGG	2 cut(s)	139, 286
PspPI	GGNCC	2 cut(s)	284, 329
PsuI	RGATCY	2 cut(s)	244, 457
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	234, 481
Sau3AI	GATC	3 cut(s)	95, 244, 457
Sau96I	GGNCC	2 cut(s)	284, 329
ScrFI	CCNGG	3 cut(s)	141, 288, 472
SduI	GDGCHC	2 cut(s)	32, 211
SetI	ASST	7 cut(s)	121, 156, 183, 201, 331, 355, 402
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	488
SsiI	CCGC	2 cut(s)	453, 481
StyD4I	CCNGG	3 cut(s)	139, 286, 470
StyI	CCWWGG	2 cut(s)	48, 150
TaaI	ACNGT	2 cut(s)	10, 187
TaiI	ACGT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	483
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	3 cut(s)	105, 190, 232
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	67, 120, 126
TspRI	CASTG	3 cut(s)	105, 190, 232
VpaK11BI	GGWCC	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.