RchiOBHm_Chr2g0168231

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
82661661 .. 82663402
1742 bp
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UTR
Exon/CDS
Intron
PRQ53591

Sequence Viewer

Length: 204 bp
ATGAAGTTTTTACGTGGAAAAATTGGTTGGACGGTTTCTGCAAATTTCGCCGGTTTCTGGAAATTTTCCGGCCATCACGACTGTTTTAGGATGATTTGGCGGATGATTCGTAAAATTGTGGTTGTGCTGCTAAGAAGACGCAGCTGGATTGGAGCGGGAAATCTTACAAGTCAGGAGAATCGAGAAGGTGATCAGGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.84

Weight (kDa)

11.55

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AciI CCGC 2 cut(s) 100, 155
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 2 cut(s) 43, 62
AfiI CCNNNNNNNGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 127, 141, 197
ApoI RAATTY 2 cut(s) 43, 62
AsuHPI GGTGA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 114, 153, 184
BccI CCATC 1 cut(s) 81
BclI TGATCA 1 cut(s) 190
BisI GCNGC 3 cut(s) 128, 142, 198
BlsI GCNGC 3 cut(s) 129, 143, 199
BpiI GAAGAC 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 50
BseGI GGATG 2 cut(s) 96, 108
BseLI CCNNNNNNNGG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 114, 153, 184
BshFI GGCC 1 cut(s) 72
BsiSI CCGG 2 cut(s) 51, 69
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 100, 155
BspANI GGCC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 34, 83
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 131, 201
BstF5I GGATG 2 cut(s) 96, 108
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 114, 153, 184
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 96, 108
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 1 cut(s) 147
CviJI RGCY 3 cut(s) 72, 144, 197
CviKI_1 RGCY 3 cut(s) 72, 144, 197
DdeI CTNAG 2 cut(s) 131, 201
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 70
EciI GGCGGA 1 cut(s) 115
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 128, 142, 198
FokI GGATG 2 cut(s) 103, 115
Fsp4HI GCNGC 3 cut(s) 128, 142, 198
GluI GCNGC 3 cut(s) 128, 142, 198
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 51, 69
HgaI GACGC 1 cut(s) 147
HinfI GANTC 2 cut(s) 106, 178
HpaII CCGG 2 cut(s) 51, 69
HphI GGTGA 1 cut(s) 200
Hpy188III TCNNGA 4 cut(s) 58, 77, 173, 182
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 34, 83
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 131, 201
HpySE526I ACGT 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 6 cut(s) 43, 64, 82, 130, 158, 179
Lsp1109I GCAGC 3 cut(s) 114, 153, 184
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 147
MluCI AATT 4 cut(s) 21, 43, 62, 114
MmeI TCCRAC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 51, 69
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 106, 178
PkrI GCNGC 3 cut(s) 129, 143, 199
Ppu21I YACGTR 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 144
SatI GCNGC 3 cut(s) 128, 142, 198
Sau3AI GATC 1 cut(s) 190
SetI ASST 3 cut(s) 16, 146, 190
Sse9I AATT 4 cut(s) 21, 43, 62, 114
SsiI CCGC 2 cut(s) 100, 155
TaaI ACNGT 2 cut(s) 34, 83
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 181
TasI AATT 4 cut(s) 21, 43, 62, 114
TfiI GAWTC 2 cut(s) 106, 178
TseI GCWGC 3 cut(s) 127, 141, 197
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 43, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.