RchiOBHm_Chr7g0200871

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
18575559 .. 18577555
1997 bp
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UTR
Exon/CDS
Intron
PRQ17981

Sequence Viewer

Length: 183 bp
ATGTTTTTAACAACTCTCCAGAAGGAATCCAGGCCTGAAATTGAATTTTTTACTTCAAAATCAAGCTCGCCGTTTTCTGCAATTCTCGCCGGTTTCTGGAAAAATTCCGGCCACCTCGATTGTTTTAGGTTTGGTGAGAAAAATATGAGCAGCATTGGGTATAGAAGGATGCTATTCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.96

Weight (kDa)

9.51

Isoelectric Point (pI)

73.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 44, 103
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 2 cut(s) 44, 57
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AoxI GGCC 2 cut(s) 32, 109
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 44, 103
AsuHPI GGTGA 1 cut(s) 146
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 31
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 89
BseBI CCWGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 162
BshFI GGCC 2 cut(s) 34, 111
BsiSI CCGG 2 cut(s) 90, 108
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 2 cut(s) 34, 111
BspANI GGCC 2 cut(s) 34, 111
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 68
BstF5I GGATG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 34, 111
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviJI RGCY 3 cut(s) 34, 66, 111
CviKI_1 RGCY 3 cut(s) 34, 66, 111
EaeI YGGCCR 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 29
FaiI YATR 3 cut(s) 146, 162, 181
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 2 cut(s) 34, 111
HapII CCGG 2 cut(s) 90, 108
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 90, 108
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 19, 97
HpyAV CCTTC 2 cut(s) 16, 159
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 16, 32, 43, 48, 82, 103, 121
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 159
MluCI AATT 4 cut(s) 39, 44, 81, 103
MnlI CCTC 1 cut(s) 125
MseI TTAA 1 cut(s) 8
MspI CCGG 2 cut(s) 90, 108
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 34
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 31
SetI ASST 3 cut(s) 68, 117, 131
SfaNI GCATC 1 cut(s) 159
Sse9I AATT 4 cut(s) 39, 44, 81, 103
SseBI AGGCCT 1 cut(s) 34
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 29
TaqI TCGA 1 cut(s) 117
TasI AATT 4 cut(s) 39, 44, 81, 103
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 150
XapI RAATTY 2 cut(s) 44, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.