RchiOBHm_Chr5g0029211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019368
Physical Location & Seq
Forward (+)
22903069 .. 22905967
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30862

Sequence Viewer

Length: 681 bp
ATGAACTCGCCTCAACCTGCTGATCATCATCCCAGAAGGATCGCACCTGGAGTGACCGGATTCACGTTCGTCGGAGCTCGACCGGTTTTCGATCGAACACCAAAAGCTTTCGATCGATATATCTCGAGCTACAGACCATATTTTTCTGTGATTCTTGAACCACCTGAAATTGAAGTTTTGACGTCGAAATCGAGCCTCGCCAGATTCTGCAAATTGTCGCCGGATTCTGGAAATTTTCCGGCCACCGAGACTATTTTGTTGACAACTTTTGCATCGGAGGTGGTTGACCGCCGCATTGACCGCCGCATTGACCGCCGCATTGACCGCCGCATTGACCGCCGCGTTGACCACCCACTGACCACCGCTTGTGGCGGCGCGTCGGACCATATTTTGAGTTTATATTATCTGGACGATGATCTACGCATCCATACGAGCGTTTTGATATATTACAAGCGGGTAATCTCACAGGTCAGGAGAATCAGGGCAGTGATCGTGCGGTTTAGAGTATTAGTATTAGATTTACAGCATTTGTTTTTAAAAATTCAGAACGTTATTTGTATTGTTATTAGTCATGTTCCGGGCTTGAATCCTTATTTCAGAATTCGGGGCGTGACAGGTATGATTTGTTATTCATATTTGATATTTGATATTGTGATAATGTATATATATATTTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

26.24

Weight (kDa)

9.66

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 25
AccII CGCG 2 cut(s) 342, 377
AclI AACGTT 1 cut(s) 549
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 3 cut(s) 232, 540, 600
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 227
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 158, 173, 586
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 77, 107, 129
AluI AGCT 3 cut(s) 77, 107, 129
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 1 cut(s) 240
ApoI RAATTY 3 cut(s) 232, 540, 600
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 6 cut(s) 292, 304, 316, 328, 340, 373
BlsI GCNGC 6 cut(s) 293, 305, 317, 329, 341, 374
Bme1390I CCNGG 2 cut(s) 48, 579
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 382
BmrFI CCNGG 2 cut(s) 48, 579
BmsI GCATC 2 cut(s) 281, 432
BpmI CTGGAG 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 579
Bsa29I ATCGAT 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 182
BsaWI WCCGGW 2 cut(s) 56, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 115
BseGI GGATG 2 cut(s) 28, 423
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 342, 377
Bsh1285I CGRYCG 3 cut(s) 83, 94, 115
BshFI GGCC 1 cut(s) 242
BshTI ACCGGT 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 115
BsiEI CGRYCG 3 cut(s) 83, 94, 115
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 5 cut(s) 57, 83, 221, 239, 578
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 6 cut(s) 22, 39, 91, 112, 415, 489
BspANI GGCC 1 cut(s) 242
BspDI ATCGAT 1 cut(s) 115
BspFNI CGCG 2 cut(s) 342, 377
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 6 cut(s) 22, 39, 91, 112, 415, 489
BssNI GRCGYC 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 28, 423
BstFNI CGCG 2 cut(s) 342, 377
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 6 cut(s) 25, 42, 94, 115, 418, 492
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 6 cut(s) 22, 39, 91, 112, 415, 489
BstMCI CGRYCG 3 cut(s) 83, 94, 115
BstMWI GCNNNNNNNGC 4 cut(s) 300, 312, 324, 336
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 46, 577
BstSFI CTRYAG 1 cut(s) 130
BstUI CGCG 2 cut(s) 342, 377
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 1 cut(s) 242
BsuTUI ATCGAT 1 cut(s) 115
BtsCI GGATG 2 cut(s) 28, 423
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 353, 492
BveI ACCTGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 115
CseI GACGC 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 1 cut(s) 572
CviJI RGCY 6 cut(s) 77, 107, 129, 195, 242, 582
CviKI_1 RGCY 6 cut(s) 77, 107, 129, 195, 242, 582
DpnI GATC 6 cut(s) 24, 41, 93, 114, 417, 491
DpnII GATC 6 cut(s) 22, 39, 91, 112, 415, 489
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 1 cut(s) 575
FatI CATG 1 cut(s) 571
FauI CCCGC 1 cut(s) 447
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 292, 304, 316, 328, 340, 373
FokI GGATG 2 cut(s) 15, 410
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 292, 304, 316, 328, 340, 373
GlaI GCGC 1 cut(s) 376
GluI GCNGC 6 cut(s) 292, 304, 316, 328, 340, 373
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 242
HapII CCGG 5 cut(s) 57, 83, 221, 239, 578
HgaI GACGC 1 cut(s) 366
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 3 cut(s) 261, 286, 346
HindII GTYRAC 3 cut(s) 261, 286, 346
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 6 cut(s) 60, 151, 204, 224, 477, 586
HpaII CCGG 5 cut(s) 57, 83, 221, 239, 578
Hpy166II GTNNAC 3 cut(s) 261, 286, 346
Hpy188I TCNGA 5 cut(s) 74, 277, 382, 546, 599
Hpy188III TCNNGA 5 cut(s) 124, 155, 228, 407, 472
Hpy8I GTNNAC 3 cut(s) 261, 286, 346
Hpy99I CGWCG 3 cut(s) 74, 187, 382
HpyAV CCTTC 1 cut(s) 30
HpyCH4IV ACGT 3 cut(s) 65, 182, 549
HpyCH4V TGCA 2 cut(s) 210, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 312, 324, 336
HpySE526I ACGT 3 cut(s) 65, 182, 549
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 6 cut(s) 22, 39, 91, 112, 415, 489
LmnI GCTCC 1 cut(s) 74
LweI GCATC 2 cut(s) 281, 432
MaeII ACGT 3 cut(s) 65, 182, 549
MaeIII GTNAC 2 cut(s) 52, 610
MalI GATC 6 cut(s) 24, 41, 93, 114, 417, 491
MboI GATC 6 cut(s) 22, 39, 91, 112, 415, 489
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 5 cut(s) 168, 212, 232, 540, 600
MmeI TCCRAC 2 cut(s) 52, 360
MnlI CCTC 3 cut(s) 21, 206, 271
MseI TTAA 1 cut(s) 536
MspI CCGG 5 cut(s) 57, 83, 221, 239, 578
MspR9I CCNGG 2 cut(s) 48, 579
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 342, 377
MwoI GCNNNNNNNGC 4 cut(s) 300, 312, 324, 336
NciI CCSGG 1 cut(s) 579
NdeII GATC 6 cut(s) 22, 39, 91, 112, 415, 489
NlaIII CATG 1 cut(s) 575
NmuCI GTSAC 2 cut(s) 52, 610
PaeR7I CTCGAG 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 6 cut(s) 60, 151, 204, 224, 477, 586
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 6 cut(s) 293, 305, 317, 329, 341, 374
Ple19I CGATCG 2 cut(s) 94, 115
Psp124BI GAGCTC 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 207
PvuI CGATCG 2 cut(s) 94, 115
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 6 cut(s) 292, 304, 316, 328, 340, 373
Sau3AI GATC 6 cut(s) 22, 39, 91, 112, 415, 489
Sau96I GGNCC 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 48, 579
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 281, 432
SfcI CTRYAG 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 124
SinI GGWCC 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 5 cut(s) 168, 212, 232, 540, 600
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 46, 577
TaiI ACGT 3 cut(s) 68, 185, 552
TaqI TCGA 8 cut(s) 79, 90, 94, 111, 115, 125, 185, 191
TasI AATT 5 cut(s) 168, 212, 232, 540, 600
TauI GCSGC 6 cut(s) 294, 306, 318, 330, 342, 375
TfiI GAWTC 6 cut(s) 60, 151, 204, 224, 477, 586
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 2 cut(s) 360, 492
TseFI GTSAC 2 cut(s) 52, 610
Tsp45I GTSAC 2 cut(s) 52, 610
TspDTI ATGAA 2 cut(s) 17, 621
TspRI CASTG 2 cut(s) 360, 492
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 3 cut(s) 232, 540, 600
XhoI CTCGAG 1 cut(s) 124
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.